LOC103046990 (rasgrp2,LOC108427446,LOC108261011,LOC106608563)


Basic Information

Item Value
gene id LOC103046990
gene name rasgrp2,LOC108427446,LOC108261011,LOC106608563
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 12707652 ~ 12760931 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681911.1
gagagagagagagagagagagagagagagagagagagagagagagagagcgcagagCAGCAACAGGCAGTTGCAGCGTAAAACACAGTCCAGGAGGCTGGAAGTTCTGACCTGCAGCCGTTTCCACACCTTCAGGAGACTGGACGAGACGCCTGCATTGCGCTTGACTGGGGGATCCAAACTTTGAAGCTCTCAAAGGTGACTTTGGAGTGGAAGAATAAAAAGAACTGAGAAAGAAGGTGAAAGGAAAGAAACAAAGGAGAGATGGATTCGTTACAAATGGAGTCAGCCACGGTGGATGAACTGGTGGACGCCTGCATCCAAGCTTTTGATGACACAGGGAAGTTAAAGGACTCCTCTGTAGTCAGGATGTTTCTAATGATGCACCCCTGGTATCTGCCCTCCACTGATCTGGCCAAGAAACTACTGCTCAAATCTCAGGAGGAGGCCTGCACTGCAGAGCTCAGGAGCAGAATCTGTCATCTAGTCAAGTACTGGATCGCAGAGTTTCCTGTAGAATTCAATCTTAATCCTGCTTTGGCTGAACAGATTAGAGATTTGAGGGAGCAACTCAACACGGAGGGCAACGAACGGGACAGTCAGCTCATCGACGTAGAGAGTGTACCCTCTTATAAGTGGAAGCGTCAGGTGACCCAGCGTATTCCATCTGTAtcgaagaaaagaaaaatgtctCTTCTCTTTGAACATCTGGATGCCTCAGAACTGGCCGAACATCTTACATACCTGGAGTATAAGTCCTTCTGCAAGATACTGTTCCAGGACTACCACAGCTTCGTCAGACATGGCTGTACAGTGGATAACCCCATCCTGGAGCGTTTCATCACACTCTTCAACAGCGTCTCCCAGTGGATCCAGCTAATGGTGCTCAGCAAGCCTACAGCCCAGCAGCGAGCCGCTGTCGTAACTCACTTCATACGGGTTGCACAGAAACTGCTACAGCTGCAGAACTTTAACACACTAATGGCGGTGGTTGGAGGCCTCAGCAACAGTTCCATCTCCAGGCTAAAAGACACACAGACCCACATCAGCAACGACACCAACAAGATTTTCAACAGTCTAATAGAACTGGTCACCTCGTGTGGAAACTACAGTCAGTACCGGCGCCGGTTTGCAGACTGTTCTGGGTTCAGGTTCCCCATCTTGGGCGTCCACCTGAAGGACTTGATTGCAGTTCACGTGGCCCTGCCAGACTGGACTAACCCGGAGAAGACACGGGTTAACTTAGCCAAGACCCAGCAGCTTTATGCCATCCTGCAGGAGCTGGCACTCGTACAGACCACACCACCCAACACAGAAGCCAACACTGATCTACTCAATCTACTCACGGTTTCACTTGACCAGTATCATACCGAAGATGAAATATACCAGCTCTCTCTACAGAGAGAACCACGGAGCACTAAACCAGCTGGACAGAACTCAAGCCCCACCCCTAGCCCATCTGCAAAGCGGCCGTCGATGATCGACGAGTGGGCAGCATCGGTGAAGCCTAAAGCAGATCCTGCCATCATCACCAAACACATTGAAAAGATGGTTGATTCTGTCTTCAAGAATTTTGACACAGATGGAGATGGTCATATTTCTCGTGAGGAATTTGAGAGTATCAGGAATAACTTCCCGTACCTCAGCAAGTTCGGAGAACTGGATACAAACCAGGATGGAAAGATCAGCAGAGAGGAGATGATAGATTACTTCATGAAGGCCAGTTCTTTGCTCAACTGTAAGATGGGCTTCATACATACGTTCAGCGAGACCACTTACGTGAAGCCCACTTTCTGTGAACACTGCGCTGGCTTTaTATGGGGCTTTTATAAGCAAGGATACAAGTGCAAAGGCTCACCCTCCGTCTCCAAGCTCATGCTGGGGTCCATCTCATTAGGCTTGTGCGTCTGTCGTTGTGCATGTTTGTGCCGTGTGTCTAAAAACACATCCCTTCCTCCAGTCCTTCTGGACCTTTGCCCTAAGTTTCTTTGTGCACTGGTCCCTCAATCACTCATTCGTTCTTCCTCTCATCCTCTTCTTTCAACACTCCATCTCTTTCCCGCAATCTCTCCTCCATCCCTGCATTAAGTCCGCCCCTTACCTCTCCTTTCCCTCTCCATCTCACCATCCAGCCATCCACGTTAAAAAACGTTTCTCATCTCTCGTCCAACCCCTTGTCCCTCTCTATCCTTCGTTTTCTGTTTCTCCAACCCTCCCCCACCTCCCTCCTCCTTTTTCTCCCATCTTCCTCCCCTCCCTCGTTATCCCTCCTTC
>XM_022681912.1
gagagagagagagagagagagagagagagagagagagagagagagagcgcagagCAGCAACAGGCAGTTGCAGCGTAAAACACAGTCCAGGAGGCTGGAAGTTCTGACCTGCAGCCGTTTCCACACCTTCAGGAGACTGGACGAGACGCCTGCATTGCGCTTGACTGGGGGATCCAAACTTTGAAGCTCTCAAAGGTGACTTTGGAGTGGAAGAATAAAAAGAACTGAGAAAGAAGGTGAAAGGAAAGAAACAAAGGAGAGATGGATTCGTTACAAATGGAGTCAGCCACGGTGGATGAACTGGTGGACGCCTGCATCCAAGCTTTTGATGACACAGGGAAGTTAAAGGACTCCTCTGTAGTCAGGATGTTTCTAATGATGCACCCCTGGTATCTGCCCTCCACTGATCTGGCCAAGAAACTACTGCTCAAATCTCAGGAGGAGGCCTGCACTGCAGAGCTCAGGAGCAGAATCTGTCATCTAGTCAAGTACTGGATCGCAGAGTTTCCTGTAGAATTCAATCTTAATCCTGCTTTGGCTGAACAGATTAGAGATTTGAGGGAGCAACTCAACACGGAGGGCAACGAACGGGACAGTCAGCTCATCGACGTAGAGAGTGTACCCTCTTATAAGTGGAAGCGTCAGGTGACCCAGCGTATTCCATCTGTAtcgaagaaaagaaaaatgtctCTTCTCTTTGAACATCTGGATGCCTCAGAACTGGCCGAACATCTTACATACCTGGAGTATAAGTCCTTCTGCAAGATACTGTTCCAGGACTACCACAGCTTCGTCAGACATGGCTGTACAGTGGATAACCCCATCCTGGAGCGTTTCATCACACTCTTCAACAGCGTCTCCCAGTGGATCCAGCTAATGGTGCTCAGCAAGCCTACAGCCCAGCAGCGAGCCGCTGTCGTAACTCACTTCATACGGGTTGCACAGAAACTGCTACAGCTGCAGAACTTTAACACACTAATGGCGGTGGTTGGAGGCCTCAGCAACAGTTCCATCTCCAGGCTAAAAGACACACAGACCCACATCAGCAACGACACCAACAAGATTTTCAACAGTCTAATAGAACTGGTCACCTCGTGTGGAAACTACAGTCAGTACCGGCGCCGGTTTGCAGACTGTTCTGGGTTCAGGTTCCCCATCTTGGGCGTCCACCTGAAGGACTTGATTGCAGTTCACGTGGCCCTGCCAGACTGGACTAACCCGGAGAAGACACGGGTTAACTTAGCCAAGACCCAGCAGCTTTATGCCATCCTGCAGGAGCTGGCACTCGTACAGACCACACCACCCAACACAGAAGCCAACACTGATCTACTCAATCTACTCACGGTTTCACTTGACCAGTATCATACCGAAGATGAAATATACCAGCTCTCTCTACAGAGAGAACCACGGAGCACTAAACCAGCTGGACAGAACTCAAGCCCCACCCCTAGCCCATCTGCAAAGCGGCCGTCGATGATCGACGAGTGGGCAGCATCGGTGAAGCCTAAAGCAGATCCTGCCATCATCACCAAACACATTGAAAAGATGGTTGATTCTGTCTTCAAGAATTTTGACACAGATGGAGATGGTCATATTTCTCGTGAGGAATTTGAGAGTATCAGGAATAACTTCCCGTACCTCAGCAAGTTCGGAGAACTGGATACAAACCAGGATGGAAAGATCAGCAGAGAGGAGATGATAGATTACTTCATGAAGGCCAGTTCTTTGCTCAACTGTAAGATGGGCTTCATACATACGTTCAGCGAGACCACTTACGTGAAGCCCACTTTCTGTGAACACTGCGCTGGCTTTaTATGGGGCTTTTATAAGCAAGGATACAAGTGCAAAGTTTGTGGTGTAAACTGTCACAAGGCATGTCGCTCTCGACTGGCAATGGAGTGTCGAAAGAGGACGAAAAGCATCAGTCACGAAACTCCGCCTGCTCTACAAGCTCGCTCTTACAGCTTCCCACCCCCGTCAAATGCACCTGCCAATCTCCAGCACACAGTGATTGCAGAGGAGGACATGGAGGCGGTGGGGGAGGGAGTGTTTGATGTTCACCTATAGTCCAGAGACATGAGACTGGCACCACTTAAACAAGCAAGAACAAAGCATGGAGGATTCACTCACTAACCCCAGTGCACTGACAACATGTTTATCATATGTTTAGCTGAGTGGGGGTTCTGTGGGTTCCAGGTTGGTCGGAGATTTACAGTTAAATAAGGCCAGCCTTTCCGACCGCAAACCTTGACCTTATCATTCCAAGAAATGTGCAAATtctgagaaataaagagatgagATGTATATGGGATTATAAGGGGCATTGTAAGAGACTTTGTCCTGCAATTCATCTGCACAGAGGAAAATCTGAGAGTCCATCAGCTCCAACAAGCGAAAAGACACTCTTCAACATAAGACATTAGCATGCTGCCCTCTTCTGGAAGAAAACTGCAAGCGCACTACAGACCGTGAGTCCGCAACCAACCCCCCCTTCAGTCCTTTTCCACTTTTACCTTTGAATGTGATCTCTCAATATTTTTGTAAACACGTTATCTAGTTATGACGTTATCTTGCATTGCTGTGCAAAGTGAAGTCTCCGtttcatatattttctatttacagagaaaaaggaaaaaatgctgTATAATCTTTCGGGAGACAGAAGGCCATGCCTATTTAAAGAACCTTAAGAAACAGAAGTCTGTCTCTgatttgtgtaaatattgttGAAAGATATCAGTAAATATGTGTACAATTAAATATGTCCTTTAATTGTATGTCCTTACAGAACTCCCAAGGTGCTGAAATATCCAGAGCTTGATGTTTAGACTGATCAGGTTGTGTTTAGTCATTGTGAGATTGAGTCGTTTACTGTTGAAtgaatttgtaattttataaatatatacatgtatattgggatattagggatgcactgaaataaacagttataggtaaa
>XM_022681913.1
agagagagagagagagagagagagagagagagagagagagagagagcgcagagCAGCAACAGGCAGTTGCAGCGTAAAACACAGTCCAGGAGGCTGGAAGTTCTGACCTGCAGCCGTTTCCACACCTTCAGGAGACTGGACGAGACGCCTGCATTGCGCTTGACTGGGGGATCCAAACTTTGAAGCTCTCAAAGGTGACTTTGGAGTGGAAGAATAAAAAGAACTGAGAAAGAAGGTGAAAGGAAAGAAACAAAGGAGAGATGGATTCGTTACAAATGGAGTCAGCCACGGTGGATGAACTGGTGGACGCCTGCATCCAAGCTTTTGATGACACAGGGAAGTTAAAGGACTCCTCTGTAGTCAGGATGTTTCTAATGATGCACCCCTGGTATCTGCCCTCCACTGATCTGGCCAAGAAACTACTGCTCAAATCTCAGGAGGAGGCCTGCACTGCAGAGCTCAGGAGCAGAATCTGTCATCTAGTCAAGTACTGGATCGCAGAGTTTCCTGTAGAATTCAATCTTAATCCTGCTTTGGCTGAACAGATTAGAGATTTGAGGGAGCAACTCAACACGGAGGGCAACGAACGGGACAGTCAGCTCATCGACGTAGAGAGTGTACCCTCTTATAAGTGGAAGCGTCAGGTGACCCAGCGTATTCCATCTGTAtcgaagaaaagaaaaatgtctCTTCTCTTTGAACATCTGGATGCCTCAGAACTGGCCGAACATCTTACATACCTGGAGTATAAGTCCTTCTGCAAGATACTGTTCCAGGACTACCACAGCTTCGTCAGACATGGCTGTACAGTGGATAACCCCATCCTGGAGCGTTTCATCACACTCTTCAACAGCGTCTCCCAGTGGATCCAGCTAATGGTGCTCAGCAAGCCTACAGCCCAGCAGCGAGCCGCTGTCGTAACTCACTTCATACGGGTTGCACAGAAACTGCTACAGCTGCAGAACTTTAACACACTAATGGCGGTGGTTGGAGGCCTCAGCAACAGTTCCATCTCCAGGCTAAAAGACACACAGACCCACATCAGCAACGACACCAACAAGATTTTCAACAGTCTAATAGAACTGGTCACCTCGTGTGGAAACTACAGTCAGTACCGGCGCCGGTTTGCAGACTGTTCTGGGTTCAGGTTCCCCATCTTGGGCGTCCACCTGAAGGACTTGATTGCAGTTCACGTGGCCCTGCCAGACTGGACTAACCCGGAGAAGACACGGGTTAACTTAGCCAAGACCCAGCAGCTTTATGCCATCCTGCAGGAGCTGGCACTCGTACAGACCACACCACCCAACACAGAAGCCAACACTGATCTACTCAATCTACTCACGGTTTCACTTGACCAGTATCATACCGAAGATGAAATATACCAGCTCTCTCTACAGAGAGAACCACGGAGCACTAAACCAGCTGGACAGAACTCAAGCCCCACCCCTAGCCCATCTGCAAAGCGGCCGTCGATGATCGACGAGTGGGCAGCATCGGTGAAGCCTAAAGCAGATCCTGCCATCATCACCAAACACATTGAAAAGATGGTTGATTCTGTCTTCAAGAATTTTGACACAGATGGAGATGGTCATATTTCTCGTGAGGAATTTGAGAGTATCAGGAATAACTTCCCGTACCTCAGCAAGTTCGGAGAACTGGATACAAACCAGGATGGAAAGATCAGCAGAGAGGAGATGATAGATTACTTCATGAAGGCCAGTTCTTTGCTCAACTGTAAGATGGGCTTCATACATACGTTCAGCGAGACCACTTACGTGAAGCCCACTTTCTGTGAACACTGCGCTGGCTTTCTGTTTTGGCTCGCACCCCAGAGAAAATAGTTCAGATTTTTGAACACTGTGTTTTTGATAGAGTTCCAAACACAGAACCCAAAAACTCCTCCACACATTCTGCCGTACTGCTGCTCATTCTACactctgtgtgtatatgtgtgtgtgtcagtttgCGACTAACCACGGCCTGGACAGTTTCAGCCACAGGTGTTACATTTAAAAGCAGTTTCCTTCTCTAGAAAAGACAAGTTTTCATTTGGTCAAATTAAAAGGTACCACGTTATCAGGATTATCTTATTTAGTTTAGAATATCAGAACCTGTATGATCCAAGAGCGctaaaacagagaaataaaaccCAGCTAACCAGCAGTGCTAAGAGATATTCATAGATGTTGTTATCAGGTTAATTATAGGTTGTAGGTTGTACTATAGGGTGAGCAAAATCAATGTCAGGACAACCTGATAAGTTTGGCCACATAAATTGACATAGAATTGTCAGCCGTCTTCCAAATGTCACATGGCTATGTTTTATTGACGTAAAACTAAAACACTTAGGGCAGCATCTTACACCATACAGAAGACGAagctcattactatcttacaccctctCAACAGTCTTTTTTAAATAGCCCTGCACctcactgttaagatatcaacacgccaaagtcagagcatacCTGGCTCTTGTAAGGAATAAAAGGTGACAtactggtttattttatgttgagcccaaaacacacccatgaataattaagagaattagttaatgccttttgcacatttcgagcTGCGCTATGCAtgcatgccctaaatccagcagcACGATGCGCAATTTATGTCTCATCTGTAGATCgcaaaaatagggcccttagttGTGACTTATAGTGATTAAAACCCAATGTCTGAAACCCAATGAAATTTTAACAGTGTTAGATGTCgctatattattgttttaacatCATGGTCAtcagtagcaaaaaaaaaaatcaaatctaaAACTGGAGCTTTATCGACGCAAGGGTTCGTTTTTGACAGATGTTACTTTGATTTCCAACCAAAATTGAACATCTACTTAATGTTGAAACTTAATGGCAACACATTGTTAGTTTTTTGCCAGGTAATTTGTAACCAAAATATCCATTGGATAACATTGGAGCTTCATGTCAACCTAGTGCTCTGTTTAAGAGATATGTGACTCTGATTTCTAAACATAATTCTATGTCTGTCTTGGAACTTGGAGCTTCATGTCAACCCAATGTTGTTTTTGACAGATACTGTATGTGACTTTGATTTCCAAACAAAATTGTGTTGGGAGTTAAAGTCTAATTGATTTTCATTTTagctacatttttaagttttttcaaTATTAAGAGTGTAAAGTCAGTCCTGATGTCAAATTGATGCCCAGTGCCTGGTTGGTATAGAAGCTTCTTTGGTGTTTGTGTTGCTCTGTACTGTGCTTAGTTACTGTGCTCTTGTTTGAATGAGTGAGTGGCATTGTTTCCCATACATAcacgtgtgtgtttttgtgcaagGAGCTTCAGATcttgcattgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgtgtgatgttctgTTCAGGTCTTTCATGTATTGTTCGCCTGCTGTGATCACCTCTCTCTCTTGATCCTAAAACCACCCTTTCCACTCTTCCTTTATCTGTTTGTCCACGTTTCTACCTTTCACCTCTCCCCCTCATTTTCCATCCTTAGGCTTCCTCTTTCAAAATCAGTAGAGCAACAGTCAATTTTACTGTGCTTTCTGCCTGACCGAtctttttctatcttttctt

Function

symbol description
rasgrp2 Predicted to enable calcium ion binding activity and guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Human ortholog(s) of this gene implicated in platelet-type bleeding disorder 18. Orthologous to human RASGRP2 (RAS guanyl releasing protein 2).

NR:

description
PREDICTED: RAS guanyl-releasing protein 2-like isoform X2

GO: NA

KEGG:

id description
K12361 RASGRP2; RAS guanyl-releasing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681911.1 False 2273 mRNA 0.50 15 12711798 12760931
XM_022681912.1 False 2956 mRNA 0.46 17 12707652 12760929
XM_022681913.1 True 3607 mRNA 0.44 14 12714305 12760928

Neighbor

gene id symbol gene type direction distance location
LOC103040758 LOC108427447 coding downstream 182332 11673093 ~ 12525320 (-)
cfap36 cfap36 coding downstream 1080178 11613656 ~ 11627474 (-)
pnpt1 pnpt1,LOC106607983 coding downstream 1095801 11597278 ~ 11611851 (-)
ppp4r3b ppp4r3b,smek2 coding downstream 1112980 11582838 ~ 11594672 (-)
ccdc88a ccdc88a coding downstream 1133509 11511180 ~ 11574143 (-)
mpdz mpdz coding upstream 55649 12816580 ~ 12879020 (-)
LOC103027614 LOC103027614 coding upstream 1038590 13799521 ~ 13807329 (-)
LOC103028152 NA coding upstream 1052467 13813398 ~ 13827899 (-)
drap1 drap1,LOC106608686 coding upstream 1289799 14050730 ~ 14058635 (-)
lurap1l lurap1l coding upstream 1426745 14187676 ~ 14198597 (-)
G184094 NA non-coding downstream 24955 12682495 ~ 12682697 (-)
LOC111195221 NA non-coding downstream 74061 12528574 ~ 12633591 (-)
G183963 NA non-coding downstream 1228263 11476636 ~ 11479389 (-)
G183960 NA non-coding downstream 1239399 11467857 ~ 11468253 (-)
G183884 NA non-coding downstream 1360489 11346910 ~ 11347163 (-)
G184150 NA non-coding upstream 31851 12792782 ~ 12794964 (-)
G184152 NA non-coding upstream 34313 12795244 ~ 12795519 (-)
LOC111195223 NA non-coding upstream 45350 12806281 ~ 12812440 (-)
G184224 NA non-coding upstream 536804 13297735 ~ 13298115 (-)
G184244 NA non-coding upstream 756748 13517679 ~ 13576322 (-)
G184051 NA other downstream 510994 12195212 ~ 12196658 (-)
gtf2a1l NA other downstream 1296008 11402707 ~ 11411644 (-)
G183880 NA other downstream 1400831 11306289 ~ 11306821 (-)
G183585 NA other downstream 2855271 9845822 ~ 9852381 (-)
G183559 NA other downstream 3050038 9655313 ~ 9657614 (-)
LOC111195225 NA other upstream 465402 13226333 ~ 13303680 (-)
LOC111195226 NA other upstream 790201 13551132 ~ 13594753 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other upstream 1227878 13988809 ~ 14040245 (-)
LOC103032041 NA other upstream 1302713 14063644 ~ 14116456 (-)
trnas-gcu_5 NA other upstream 1328775 14089706 ~ 14089787 (-)

Expression


Co-expression Network