LOC103041365 (LOC108427445)


Basic Information

Item Value
gene id LOC103041365
gene name LOC108427445
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 12765229 ~ 12792283 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681914.1
GAAAACGCGTGGCGGGTAAAGAGAGCCTCCCGGCTGTACTGAGCTCCGTGTTCAGCGGGGTTtctggtttttttttacaggaaaagGAGACAGAGGGAATGAGCTGCTGACTCCCGGGGAGCTGCCCACATTCACAACATAAACGATGAGGACTAAAGAAGGAGCACCCTCAGACCGTGGCTATTTGGTCGGAATCATTTTCTTTATCCTTGGACTGGGAACTCTGCTACCATGGAATTTTTTCATGACTGCCTCCAtgtatttcaaTAACAGACTGAGTGGAGGGAACACGTCTGAGTCGAGTAATGGAACAGCTACTGCCAGGAAGGAGTATTACTTCAACAACTGGATGACTTTACTGTCCCAGCTGCCTCTGCTGCTCTTCACCCTTCTCAACTCCATCCTCTACCCACGGATTTCGGAGAAGGTGCGGATAGCAGGCAGTCTGGTTTTTATCCtcatcctcttcatcctcaCTGCCATCCTGGTGAAGATTCCCATGGAGGAGGACCAATTCTTCTCCATCACTATGGCGACCATCTGGTTCATAAACTcatTTGGAGCGGTGCTGCAGGGCagtctgtttggtttggttggacTGCTGCCTCAGAAGTACAGTGCAGTATTTATGAGTGGACAAGGTCTGGCGGGAACCTTCGCTGCCCTTGCCATGCTCTTCGCCATCGCGAGTAAATCAGATGACGAGACTGCTGCTCTGGGATATTTCATCACTCCGTGTGTGGGGACTCTAGTAACACTGATCAGCTACCTACTGCTGCCCAAACTGgACTTTGCCAGGCATTATCTGAACAGCAGTAGGAGTCAGAACTATGAAATTGATACTTCTCACCAGCTGCTCCCTAAAGAGACGCCTCTGGAAACCACAGAGCTTAATGGCCATGCAAACGGATCTGTACCTAAAGGAAACCCCAGCGGTTCGGCCAGTGAGGATGTTGATGGTGGCAGGCAAGCCTTCATCAGTCTAGAGAATGCTGATGCTAAAGAGACTAAAAGCTCAGTCCTGGAGGTGTTTAAAAAGATCTGGGTGATGGCGTTCTGTGTAACATTTGTGTTCACGGTCACCCTCTCTGTGTTCCCCGCTGTTACAGTGGACGTGAAGACTGCTTATCCAGGAAATTGGGAGCCTTATTTCATTCCTGTGTGTTGTTTCCTGGTCTTTAACGTGATGGACTGGACCGGGAGAACAGTCACATCTCTCGTACAATGGCCTCCTAAGGAAAGTCGCTTGTTTCCGGCCTTGGTGATCAGTCGGGTGGTCTTTGTACCTCTGCTGATGCTATGTAATGTCCAGGAGCGTCGTTTCCTGCCTGTTTTCTTTTCCCATGATGTTGTCTTcgttattattatgattttgtTCTCCGTCACCAGCGGCTACTGCGTCTGCCTCTCCATGTCTTATGCACCACAGCTGGTGGCTCCAAAAGACGGAGAGACTGCTGGAGCTCTGATGACGTTTTTCCTGGCTCTGGGTCTTTCTCTGGGAGCTGCCATCTCATTCCTGCTGCGTTTTCTTGTCTAGCCCAAGTTGTGCTCATCTAACGCTCACCCTCAAAAGCCCTCATGCTGTAACCTTCTTTCACTCCATCGGAAAGGTGAGACGCCCCCTCATCAGAACCATGCAAAGAAAAAGCCTTACTGGGCATTGCAGGAGCATCATCATCATTGCTGGAGTTGTTCAGAGGAATTGGCATGGTAGGAGAAAAAGGACTGAGCTGGAAGGCGACATGAAGATTCTGGTGGCCATATCTGCTGCAAAAAAAGCATAGTCAAAAAAGGGAGATGGTGAGGATGATTTCAGGTAGAATGAAAGGGATATACACCTCACCATcattaacaaaaacattttcaacAATTTAAACTGTAACAGTATCTAACACTGCCACATCTGGTTACAGTCTTAGAAATAAGTGTCAAATTAGTGTCATTGCTGGTTCTTTGGGTAGCTGCTGTAGAAGAATCACTTTAAGCTCTTAAAATAATCTTCTGTGGTGTATATAGAACCTGTCACACAACGTAAAGGTTCTAAACAAAGGTTAGTGTGATTGTCTAAACTAgcaatttgaaaaatatattaaataaaatttca
>XM_022681915.1
GCACCTGAGCATGTGGTCCTCCTGTTCTCTTCCGCTCTCAGTTCTCTGATGACTGAATATTACTGAGGGCTGGTGCTTCATTATCAGCGCTCTGCCCACATTCACAACATAAACGATGAGGACTAAAGAAGGAGCACCCTCAGACCGTGGCTATTTGGTCGGAATCATTTTCTTTATCCTTGGACTGGGAACTCTGCTACCATGGAATTTTTTCATGACTGCCTCCAtgtatttcaaTAACAGACTGAGTGGAGGGAACACGTCTGAGTCGAGTAATGGAACAGCTACTGCCAGGAAGGAGTATTACTTCAACAACTGGATGACTTTACTGTCCCAGCTGCCTCTGCTGCTCTTCACCCTTCTCAACTCCATCCTCTACCCACGGATTTCGGAGAAGGTGCGGATAGCAGGCAGTCTGGTTTTTATCCtcatcctcttcatcctcaCTGCCATCCTGGTGAAGATTCCCATGGAGGAGGACCAATTCTTCTCCATCACTATGGCGACCATCTGGTTCATAAACTcatTTGGAGCGGTGCTGCAGGGCagtctgtttggtttggttggacTGCTGCCTCAGAAGTACAGTGCAGTATTTATGAGTGGACAAGGTCTGGCGGGAACCTTCGCTGCCCTTGCCATGCTCTTCGCCATCGCGAGTAAATCAGATGACGAGACTGCTGCTCTGGGATATTTCATCACTCCGTGTGTGGGGACTCTAGTAACACTGATCAGCTACCTACTGCTGCCCAAACTGgACTTTGCCAGGCATTATCTGAACAGCAGTAGGAGTCAGAACTATGAAATTGATACTTCTCACCAGCTGCTCCCTAAAGAGACGCCTCTGGAAACCACAGAGCTTAATGGCCATGCAAACGGATCTGTACCTAAAGGAAACCCCAGCGGTTCGGCCAGTGAGGATGTTGATGGTGGCAGGCAAGCCTTCATCAGTCTAGAGAATGCTGATGCTAAAGAGACTAAAAGCTCAGTCCTGGAGGTGTTTAAAAAGATCTGGGTGATGGCGTTCTGTGTAACATTTGTGTTCACGGTCACCCTCTCTGTGTTCCCCGCTGTTACAGTGGACGTGAAGACTGCTTATCCAGGAAATTGGGAGCCTTATTTCATTCCTGTGTGTTGTTTCCTGGTCTTTAACGTGATGGACTGGACCGGGAGAACAGTCACATCTCTCGTACAATGGCCTCCTAAGGAAAGTCGCTTGTTTCCGGCCTTGGTGATCAGTCGGGTGGTCTTTGTACCTCTGCTGATGCTATGTAATGTCCAGGAGCGTCGTTTCCTGCCTGTTTTCTTTTCCCATGATGTTGTCTTcgttattattatgattttgtTCTCCGTCACCAGCGGCTACTGCGTCTGCCTCTCCATGTCTTATGCACCACAGCTGGTGGCTCCAAAAGACGGAGAGACTGCTGGAGCTCTGATGACGTTTTTCCTGGCTCTGGGTCTTTCTCTGGGAGCTGCCATCTCATTCCTGCTGCGTTTTCTTGTCTAGCCCAAGTTGTGCTCATCTAACGCTCACCCTCAAAAGCCCTCATGCTGTAACCTTCTTTCACTCCATCGGAAAGGTGAGACGCCCCCTCATCAGAACCATGCAAAGAAAAAGCCTTACTGGGCATTGCAGGAGCATCATCATCATTGCTGGAGTTGTTCAGAGGAATTGGCATGGTAGGAGAAAAAGGACTGAGCTGGAAGGCGACATGAAGATTCTGGTGGCCATATCTGCTGCAAAAAAAGCATAGTCAAAAAAGGGAGATGGTGAGGATGATTTCAGGTAGAATGAAAGGGATATACACCTCACCATcattaacaaaaacattttcaacAATTTAAACTGTAACAGTATCTAACACTGCCACATCTGGTTACAGTCTTAGAAATAAGTGTCAAATTAGTGTCATTGCTGGTTCTTTGGGTAGCTGCTGTAGAAGAATCACTTTAAGCTCTTAAAATAATCTTCTGTGGTGTATATAGAACCTGTCACACAACGTAAAGGTTCTAAACAAAGGTTAGTGTGATTGTCTAAACTAgcaatttgaaaaatatattaaataaaatttca
>XM_022681916.1
CAAAGAAGACAGGATAAGTACAATCTGCCCACATTCACAACATAAACGATGAGGACTAAAGAAGGAGCACCCTCAGACCGTGGCTATTTGGTCGGAATCATTTTCTTTATCCTTGGACTGGGAACTCTGCTACCATGGAATTTTTTCATGACTGCCTCCAtgtatttcaaTAACAGACTGAGTGGAGGGAACACGTCTGAGTCGAGTAATGGAACAGCTACTGCCAGGAAGGAGTATTACTTCAACAACTGGATGACTTTACTGTCCCAGCTGCCTCTGCTGCTCTTCACCCTTCTCAACTCCATCCTCTACCCACGGATTTCGGAGAAGGTGCGGATAGCAGGCAGTCTGGTTTTTATCCtcatcctcttcatcctcaCTGCCATCCTGGTGAAGATTCCCATGGAGGAGGACCAATTCTTCTCCATCACTATGGCGACCATCTGGTTCATAAACTcatTTGGAGCGGTGCTGCAGGGCagtctgtttggtttggttggacTGCTGCCTCAGAAGTACAGTGCAGTATTTATGAGTGGACAAGGTCTGGCGGGAACCTTCGCTGCCCTTGCCATGCTCTTCGCCATCGCGAGTAAATCAGATGACGAGACTGCTGCTCTGGGATATTTCATCACTCCGTGTGTGGGGACTCTAGTAACACTGATCAGCTACCTACTGCTGCCCAAACTGgACTTTGCCAGGCATTATCTGAACAGCAGTAGGAGTCAGAACTATGAAATTGATACTTCTCACCAGCTGCTCCCTAAAGAGACGCCTCTGGAAACCACAGAGCTTAATGGCCATGCAAACGGATCTGTACCTAAAGGAAACCCCAGCGGTTCGGCCAGTGAGGATGTTGATGGTGGCAGGCAAGCCTTCATCAGTCTAGAGAATGCTGATGCTAAAGAGACTAAAAGCTCAGTCCTGGAGGTGTTTAAAAAGATCTGGGTGATGGCGTTCTGTGTAACATTTGTGTTCACGGTCACCCTCTCTGTGTTCCCCGCTGTTACAGTGGACGTGAAGACTGCTTATCCAGGAAATTGGGAGCCTTATTTCATTCCTGTGTGTTGTTTCCTGGTCTTTAACGTGATGGACTGGACCGGGAGAACAGTCACATCTCTCGTACAATGGCCTCCTAAGGAAAGTCGCTTGTTTCCGGCCTTGGTGATCAGTCGGGTGGTCTTTGTACCTCTGCTGATGCTATGTAATGTCCAGGAGCGTCGTTTCCTGCCTGTTTTCTTTTCCCATGATGTTGTCTTcgttattattatgattttgtTCTCCGTCACCAGCGGCTACTGCGTCTGCCTCTCCATGTCTTATGCACCACAGCTGGTGGCTCCAAAAGACGGAGAGACTGCTGGAGCTCTGATGACGTTTTTCCTGGCTCTGGGTCTTTCTCTGGGAGCTGCCATCTCATTCCTGCTGCGTTTTCTTGTCTAGCCCAAGTTGTGCTCATCTAACGCTCACCCTCAAAAGCCCTCATGCTGTAACCTTCTTTCACTCCATCGGAAAGGTGAGACGCCCCCTCATCAGAACCATGCAAAGAAAAAGCCTTACTGGGCATTGCAGGAGCATCATCATCATTGCTGGAGTTGTTCAGAGGAATTGGCATGGTAGGAGAAAAAGGACTGAGCTGGAAGGCGACATGAAGATTCTGGTGGCCATATCTGCTGCAAAAAAAGCATAGTCAAAAAAGGGAGATGGTGAGGATGATTTCAGGTAGAATGAAAGGGATATACACCTCACCATcattaacaaaaacattttcaacAATTTAAACTGTAACAGTATCTAACACTGCCACATCTGGTTACAGTCTTAGAAATAAGTGTCAAATTAGTGTCATTGCTGGTTCTTTGGGTAGCTGCTGTAGAAGAATCACTTTAAGCTCTTAAAATAATCTTCTGTGGTGTATATAGAACCTGTCACACAACGTAAAGGTTCTAAACAAAGGTTAGTGTGATTGTCTAAACTAgcaatttgaaaaatatattaaataaaatttca

Function

NR:

description
PREDICTED: equilibrative nucleoside transporter 2-like

GO: NA

KEGG:

id description
K15014 SLC29A1_2_3, ENT1_2_3; solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681914.1 True 2107 mRNA 0.47 13 12765229 12792283
XM_022681915.1 False 2077 mRNA 0.47 13 12765444 12792283
XM_022681916.1 False 2010 mRNA 0.46 13 12768577 12792283

Neighbor

gene id symbol gene type direction distance location
LOC107197667 crgm2,LOC103042598,LOC108427436,LOC108427435,LOC108441183,LOC108260664,LOC108260583,LOC108260584,LOC108260580 coding upstream 228567 12535768 ~ 12536662 (+)
LOC103040140 NA coding upstream 1130239 11631805 ~ 11634990 (+)
LOC103044327 LOC108429269,LOC108260508,LOC108260727,LOC105890925,LOC106577117 coding upstream 1254837 11504686 ~ 11510392 (+)
rtn4 rtn4,LOC108412986 coding upstream 1285845 11456280 ~ 11479384 (+)
LOC103043730 lhcgr,LOC108412992 coding upstream 1362948 11391494 ~ 11402281 (+)
LOC103047288 LOC108427443 coding downstream 106908 12899191 ~ 13266400 (+)
LOC103041974 LOC108427427 coding downstream 513666 13305949 ~ 13526412 (+)
hgfac NA coding downstream 838259 13630542 ~ 13654273 (+)
LOC103042284 LOC103042284,LOC108427430 coding downstream 915406 13707689 ~ 13709643 (+)
slc24a2 slc24a2 coding downstream 942963 13735246 ~ 13785212 (+)
G184093 NA non-coding upstream 82486 12682209 ~ 12682743 (+)
LOC111195162 NA non-coding upstream 86295 12676208 ~ 12678934 (+)
LOC111195220 NA non-coding upstream 568986 12194675 ~ 12196243 (+)
G183991 NA non-coding upstream 1088806 11673123 ~ 11676423 (+)
G183928 NA non-coding upstream 1147941 11616785 ~ 11617288 (+)
G184101 NA non-coding downstream 2906 12795189 ~ 12795519 (+)
LOC111195222 NA non-coding downstream 6473 12798756 ~ 12803722 (+)
LOC111195224 NA non-coding downstream 14981 12807264 ~ 12809147 (+)
G184171 NA non-coding downstream 163892 12956175 ~ 13055713 (+)
G184182 NA non-coding downstream 285675 13077958 ~ 13130798 (+)
G183996 crgm2,LOC103042598,LOC108441183,LOC108427435,LOC108427436,LOC108427240,LOC108260579,LOC108260664,LOC108260583 other upstream 1073293 11690901 ~ 11691936 (+)
ppp1r21 ppp1r21,LOC107578819 other upstream 1261750 11483052 ~ 11503479 (+)
clhc1 NA other upstream 1308856 11431984 ~ 11456373 (+)
G183892 rps27a other upstream 1333303 11399062 ~ 11431926 (+)
rnf24 rnf24,LOC107551705,LOC107689472 other upstream 2447929 10261584 ~ 10317300 (+)
LOC111195141 LOC107096934,LOC108427427,LOC103480793 other downstream 742779 13535062 ~ 13545495 (+)
LOC103025917 LOC108427442 other downstream 867864 13660147 ~ 13691164 (+)
c21h11orf68 drap1,cunh11orf68,c29h11orf68,LOC106608686,LOC107684582,LOC105923970,LOC107748024,LOC107670404,LOC103032366 other downstream 1258504 14050787 ~ 14063300 (+)
G184594 NA other downstream 2467093 15259376 ~ 15261534 (+)
chrna9 chrna9,LOC107548308 other downstream 2947935 15740218 ~ 15750689 (+)

Expression


Co-expression Network