sclt1 (sclt1)


Basic Information

Item Value
gene id sclt1
gene name sclt1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 4395815 ~ 4423038 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682131.1
GAGCGGTTTAGTGAGCAACACCGCTCCGCAGCAacgaatctgattggctgagcctcTTAGCTTTAAACAGACGGCGCAAGGTCGGCTTCCACGATGGCTTCCACGCAAATCGAGTTCCTCCAGGATCAAGtgcATCGGTTAAGTTTGGCGCTGGGACGATACCAGGAGTCATCATCTGCTAACTTCTGCACTCagACTGAAGATGTGGGGTCAGAATCTGCAGCACCGTGGCTTGCAGACAGAGGCATCATGGCGCCTCTGATTGCGGAGTATGACCGACACATGCAGCAGATGGAGGCTCAGCTTAAACTGTACCAGAGGCAGATGGCGGATGTCAAGGCCAGTCTGGAGCAGGTGGTCCGAGAGAACGAACGTCTCCATGCAGAGCAGAGGGTTTCTGTGGAACGGCAGCTGCAGTCTCTCTCTGTGGGAGTGGATGGGGATGCTGCTGCAGATGCAGCTACAGTTAACAACCTGGAAGAACAAGTCAAGTGCGCTGTCgagGAGAAGGAGCGAGCGCTGCAGATGTGGCAGGCAGCTGCGCAGGAGCTGGACCGTCTGCAGAAACTCTACCAGAGCACCATGAGGGACGGACAACTGCACACCGCCGAGCGACAACACATacagAATCAGCTGGCCCAGGTTCAACAGCACACTCAGAAACTGCAGACAACCAATCAGAGCTTAGAATCGACcaatcagcagtttctgaagaCCATCGCAGAGCAGAGCAGTGAACTGGAGGAGCTCCGCAACCAGCTCAGGCAAGCCAAGCAGGAGCTGAGAACCGCCACAGCAAAAGTAGACGAGATGACCAGACTCATGCAGAATGTTCAGGACCAAATGCAGCGGacgGAGGAAGATGCAGCTGAGGCTCATGGGAGAGAGGAAGCCTCTGACCGCAGACTGCAGCAGCTACAGGCAGCACTCAGCCAATTAGAGGGCCGGTTGAAGGGGGCGACGGCGGAGGCGGAGTCAGTGCGGAGGGAGCAGGCGGTGTGGGAAAGGAAGCTGGGGGAGTTGCAGAGCCGCTGTGCCACTTTAGAGGAGGAGAAATTCGAAACTTTCCAGCGTCTCCGAAACTCCCTGCAGCTCGCCGAGGAGGCGTCATTACAGAGAGACCAGGCTCAGCTAAGGGAGAATCAGAGGGTGGAGGAGTTGGAGAGAATGAAGGAAGGGATGAAGCAGCTGGTGGAGGAAGCAGCAGCCCGCACTAGGAGAGAGgtggAAGCGGTCCGTAAGCAGTACAACAGTCAGATTCATCGCCTGGCTGAAGAACTGTCTGCTCTACAGCTGGTGAGTATACGTTCAGTAGTCACTGAGTGTACTCtctggtcagtgcagtgttctgcaTCAgtgtaTAGAGAAGGCCGTTGTGGGGAGCCGGAGCTGAGGAAGATGGAGGCACTTCATCAGAGGTGCTTAAatgcagagagacagaaggaggaAACGGAGCTCACTCTGAATACCACACAGTCCAATATGAAGAAACTGGAGATGgaCTTCAGTGAGGAGCTCTCCCGGTGTCAGGAGGAGGTGCGCCGGCTGCAGGTGGCGCTGGCGAGCGCTCGGGAGGAGAGCAGCAGCATCAGCGAGGAGCGTCTCAGCCTTCAGCAGGAGAACCAGCAGCTGCACAGAGACATGGACACACTCCGCAAAGAGTGTGTGTTAGCACAGAGACAGGCCAAACAACAGGTGTCCTGTATGCAGCAGGAGCTGAGTGTgaaggagcagagtctggaggccAGGCTgagggagatggaggagagCAGTAAGAGCTCTAACGCGGGACTGAGCCGCCTGCTGCAAGCCCAGCAGAAAACCACCAACCGATACAGAGAAGAGGCCAAGCAGCTCACACACACCTTCCAGAACACGGTCAGCTCGCTCAGatcaGAGCTGAACAGGCAGAAGCAGAGGTGTGAGGAACTGGAGATTCAGCTGGAAACCGACCACAAGAAAATCCTGGAGCAGGCGAGTGTGAAAgggaagcagagtctggaggccAGGCTgagggagatggaggagagCAGTAAGAGCTCTAACGCGGGACTGAGCCGCCTGCTGCAAGCCCAGCAGAAAACCACCAACCGATACAGAGAAGAGGCCAAGCAGCTCACACACACCTTCCAGAACACGGTCAGCTCGCTCAGatcaGAGCTGAACAGGCAGAAGCAGAGGTGTGAGGAACTGGAGATTCAGCTGGAAACCGACCACAAGAAAATCCTGGAGTTTGAGAGACAGCTGGTGGAGCATCAGGAGAAAAACGCTCGTCTACAGACACGCCTGAGCCAGGCTGAACACAGAGCCTCCAGTGCATCTCAGCagctcAGTGTGATCCAAAGGAGAAAAGCTGCTTCCATGATGGATCTGGACACACTGTCATAAAAGAGTCACCTGCCACTTCCAATCaccatgtttacatttttatcacACTAAAGAGATTCTGTAGAAAAGGGAAAtgattttaaactgtaaaatagtGTTTAAAAGTAAGTTTtggtaacttttttaaataagcaagttaatttgtttaattttgaatataaaatataattgagAGGCATTTCTCTAGCCATGTTTCTGTTGTTTggaaattaatattactttaattttataaattttttatgTGGTAAATACATCAgttaaatttttttgtattaaaaataatttaatttaaaactaaacacaGAGGCATTTTCTTTCTGAATTAAGCGTGTTGGAAAGTAAAAGTGCGTGCCTGATTATAGCCTTACCCTTTTGGTGATTTAAGTGaaaaatgttttgataaaaGAATGTAATCGAACAAGATCTTAATTTCTTTATATGCAAGTTTTATTGATTTGTCGTTTAACGTTTAACAGTTCAACTTTAACAATCGCTCAGCAGGAAAGAGATCCACAAAGCGCACACGCACTTGCACACTtgctcgctcacacacaccc

Function

symbol description
sclt1 Predicted to act upstream of or within clustering of voltage-gated sodium channels. Orthologous to human SCLT1 (sodium channel and clathrin linker 1).

NR:

description
sodium channel and clathrin linker 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682131.1 True 2945 mRNA 0.51 23 4395815 4423038

Neighbor

gene id symbol gene type direction distance location
pcdh18 LOC108413018 coding upstream 568050 3815403 ~ 3827765 (+)
LOC103037959 NA coding upstream 845290 3536363 ~ 3550525 (+)
LOC103037633 NA coding upstream 860763 3524196 ~ 3535052 (+)
LOC103038692 acsl1,acsl1a,LOC107562746,LOC107702334 coding upstream 958771 3399191 ~ 3437044 (+)
LOC103039527 NA coding upstream 1015272 3344537 ~ 3380543 (+)
LOC103036009 NA coding downstream 51695 4474733 ~ 4479749 (+)
LOC103036626 LOC108414886,LOC108414926,LOC108414927 coding downstream 74999 4498037 ~ 4506712 (+)
LOC103029042 chic2,LOC103029042,LOC108441324,LOC103353160,LOC101486940,LOC106602128 coding downstream 519383 4942421 ~ 4948100 (+)
LOC103030219 tsn5,tspan5b,LOC108441323,LOC107557938,LOC107692617,LOC107758863,LOC105893813,LOC103360687 coding downstream 548066 4971104 ~ 4981396 (+)
LOC103028516 slc24a2,LOC103028516,LOC108441320,LOC108260852,LOC107665969 coding downstream 572739 4995777 ~ 5031681 (+)
G182592 NA non-coding upstream 3437 4376381 ~ 4392378 (+)
G182566 NA non-coding upstream 237013 4158360 ~ 4158802 (+)
G182530 NA non-coding upstream 478199 3909903 ~ 3917616 (+)
G182511 NA non-coding upstream 680995 3714609 ~ 3714820 (+)
G182510 NA non-coding upstream 729318 3666219 ~ 3666497 (+)
G182591 NA non-coding downstream 13515 4436553 ~ 4437168 (+)
G182597 hgsnat,LOC108411545,LOC107656620,LOC107565475 non-coding downstream 14946 4437984 ~ 4442647 (+)
G182600 hgsnat,LOC108411545 non-coding downstream 25643 4448681 ~ 4453032 (+)
G182603 LOC108414886,LOC108414926,LOC105010209,LOC107674463,LOC108411552,LOC107750516,LOC108414927 non-coding downstream 55263 4478301 ~ 4506708 (+)
G182606 NA non-coding downstream 90715 4513753 ~ 4514215 (+)
G182361 NA other upstream 1105557 3287938 ~ 3290258 (+)
G182356 NA other upstream 1136965 3256367 ~ 3258850 (+)
LOC111195173 NA other upstream 1826521 2525683 ~ 2569294 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other upstream 1935143 2457564 ~ 2460672 (+)
G181818 NA other upstream 4003685 391614 ~ 392130 (+)
LOC103029349 NA other downstream 512545 4935583 ~ 4941134 (+)
G182790 NA other downstream 1003829 5426867 ~ 5427255 (+)
G183001 pgm2 other downstream 1619650 6042688 ~ 6048474 (+)
pax5 pax5 other downstream 1827736 6250774 ~ 6367190 (+)
rnf38 rnf38,LOC107551561 other downstream 2022225 6445263 ~ 6498192 (+)

Expression


Co-expression Network