Gene
RNA
| Item | Value |
|---|---|
| gene id | G71038 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 3825833 ~ 3965568 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU81004 | True | 2167 | lncRNA | 0.51 | 12 | 3825833 | 3965568 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_03736684_03742335 | LMBRD1 | coding | upstream | 82767 | 3736636 ~ 3743066 (+) |
| CI01000012_03633636_03709136 | LMBRD1 | coding | upstream | 116697 | 3633636 ~ 3709136 (+) |
| CI01000012_03414617_03418724 | NA | coding | upstream | 406425 | 3414617 ~ 3419408 (+) |
| CI01000012_03394096_03396897 | NA | coding | upstream | 428936 | 3393889 ~ 3396897 (+) |
| CI01000012_03267719_03279187 | SLC35F3B, SLC35F3 | coding | upstream | 546396 | 3267719 ~ 3279437 (+) |
| CI01000012_03989870_04006406 | NA | coding | downstream | 24143 | 3989711 ~ 4006595 (+) |
| CI01000012_04052923_04100797 | NA | coding | downstream | 87045 | 4052613 ~ 4101000 (+) |
| CI01000012_04179776_04184166 | NA | coding | downstream | 214208 | 4179776 ~ 4184450 (+) |
| CI01000012_04209791_04237026 | NA | coding | downstream | 243458 | 4209026 ~ 4237160 (+) |
| CI01000012_04266133_04266370 | NA | coding | downstream | 300565 | 4266133 ~ 4267426 (+) |
| G70327 | NA | non-coding | upstream | 211494 | 3549541 ~ 3614339 (+) |
| G70350 | NA | non-coding | upstream | 345748 | 3479640 ~ 3480085 (+) |
| G70322 | NA | non-coding | upstream | 439187 | 3386409 ~ 3386646 (+) |
| G70321 | NA | non-coding | upstream | 440312 | 3385306 ~ 3385521 (+) |
| G70192 | NA | non-coding | upstream | 459559 | 3364923 ~ 3366274 (+) |
| G71124 | NA | non-coding | downstream | 54337 | 4019905 ~ 4020306 (+) |
| G71134 | NA | non-coding | downstream | 77414 | 4042982 ~ 4044235 (+) |
| G71145 | NA | non-coding | downstream | 102045 | 4067613 ~ 4067833 (+) |
| G71152 | NA | non-coding | downstream | 122301 | 4087869 ~ 4088242 (+) |
| G70029 | NA | other | upstream | 1194448 | 2622478 ~ 2631385 (+) |
| G68725 | NA | other | upstream | 3140977 | 683523 ~ 684856 (+) |
| G68660 | NA | other | upstream | 3289880 | 535566 ~ 535953 (+) |
| CI01000012_00194370_00195347 | HCAR1-3 | other | upstream | 3620059 | 193903 ~ 195676 (+) |
| CI01000012_04424569_04425090 | NA | other | downstream | 454671 | 4424569 ~ 4425756 (+) |
| CI01000012_04495631_04501066 | NA | other | downstream | 532885 | 4495631 ~ 4501066 (+) |
| CI01000012_05177587_05180517 | SRSF5A | other | downstream | 1211327 | 5176895 ~ 5180970 (+) |
| G71199 | NA | other | downstream | 1447682 | 5413250 ~ 5416785 (+) |
| G71218 | NA | other | downstream | 1570284 | 5535852 ~ 5538384 (+) |
