LOC111195264


Basic Information

Item Value
gene id LOC111195264
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 6551253 ~ 6564327 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682138.1
ttgACAATGAATCTCCAACAATAAATGACTTAATGAAGAAAAGTACTGAAATCAGTTCAGGTCCACCAGCTGTGCGCCGTCTACTTACAACAAGAAGTAATCTAGATGAGAGTGGCAAGATCAGAAAGTGGACATTCGGACAGCAAAATGCCAACATGCAGAATAAAACAATACTGATGGTGGGAGAAACTGGAACAGGCAAGACCACTCTGATCAACACCATGACCAATTACTATCTGGGGGTGAAGTTTGAGGATAATGTGTGGTTTGAGATCAcagaagaacaaaagaaagatcAAACTGAATCTAAAACATCTGAAATCACTGTGTATGAGATCTTCTCTGAACAGAAATCTGAATCTCTTACCATCATCGATACTCCAAGAATAGATAAGGACATGAAAATTTCTCAAAATCTGTGTAAACTGTTTCTACATGAAACTGGAGTGAAGAGTCTGGATGCTGTGTGTCTTGTACTGAAATCATCTCAGAACAGGATCTCAGAGAGACTGCGCTACATCTTTGAAGCAATTCTTGCCTTATTTGGTAAAGACATAGAAAGAAATGTAGTGCTcttcattacacacacagatagactAACTGTAGATTTTCTGGAAGCTGTTGAGAAAGAAAAGATCCTCTGTTGTCACAATGCTGAGAACAAACCGGTTCACTTCCTGTTCAACAACACTCAGTCTGTGATGCAGACAGCAAAAACTAAACGGACCATTAAGTTGGCTTGGGAAATGGGGCAAAGTAGCATGAAACGCTTTCTGGATTTCCTAAAATCACGTCAGAGAAAAGGCTTGACTATGAGTGTGAGTGTTCTAAAGGAGCGCATGCAGCTTGAAGACTGTATTCAGAGTTTAAAGAAGCAAATTGAGTTCATGgaggaaacagagaaagaacTGTCTGAAATGCAGAACTTGCTGAaacttaataaagaaaatatcttATTGAAAGATGCCAGTGAGTTAATCATGAAACTCTCGAAGACAACATATTCTCCACTCACACTTTGTTACCTTGACTTCTTGATTTCTCGAGTTGAAGAAGCTGGAGAAGAAGAGTGGGCTCAGAAACTGAAGGAGCtccagaaaagaaaaatatcaaGgtcaaCTGATCCCCTCCCGCACCAGCAGTTTCCTCAAGCCCAATCATGTCCACAAAAGCTGGGTGGACCGCACACTGCCACTTTCCAAGGACACAAGCTGGGTGATGCATCATCagctttaaatgatttaattaagaaaagtATTCAACTCAGGTCAGGTCCACCAGCAGTGCGTCACCTTCACACAACAAGAAGTAATCTAGATGAGAGTGGAAAGATCAGAAAGTGGACATTTGGACAGAAACACCATAATATGCAGAATAAAACTATACTGATGGTGGGAGAAACTGGAACAGGCAAGACCACTCTGATCAACACCATGACCAATTACCATCTGGGGGTGAAATTTGAGGATAATGTGTGGTTTGAGATCGCagtagaagaaaagagagatcaAACAGAATCTCAAACATCTGAAATCACTGTGTATGAGATCTTCTCTGAACAGaaaccttctctctctccattcatCGAACACTCCAGGAAATATGAGACACCAGAGGGAATAGATCAAGGACATGAAAATTCCTCAGAATCTGCAAACTTGTTTCTACATGAAACTGGAGTGAAGGATCTGGATGCTGTGTGTCTTGTACTGAAAGCATCTCAGAACAGAATCTCAGAGATTCAGCGCTACATCTTTGAAGGGGTTCTTTCTTTATTTGGTAAAGACATAGGAGAGAATATAGTGCTTCTTATTACATACTCAGATGGAGCAACTCCAGAAAATGTTCTGAAAGCtgtagagaaagaaaagatCCCCTGCTGCCACGATGATGAGAATGAACCTGTTCACTTCCTGTTCAACAACTGTCAGTCTGTGATTCAGACAGCAAAAACTAAGTGTGCTGTAAAGATAGGTTGGGAAATGGGGGAGGAGAGTCTGGAGGAGTTTTTTGAATTCCTAAaatcaagagagagaaaaagcttGACTATGACTGTGAATGTGCTAAAGGAGCGCATCCAGCTTGAGGCCTGTGTTCAGAGTTTAAAGGAACACACTGAATTCATGGAGGCAAAACAGAGAGAACTGATTAAAGCGAAACTGAACAAAGACCAGATGAGCCTACTAAGCATACTGAAAGAGCTCCTGgctgagaaagaaaaagaaaaaaacagtttagtgaaagAAGcctataaaacaataataaaactgtATGAGATTGCACTGATACCAGACTCTGCATTTACTGTTCAGTACCTTGATTTTCTGATTCCTCGAGTTGAAGAAGCTGGAGAAGTAGAGCAGGCTCAAAAACTGAAGGACCTCCTGAAATATACACATAAAGAACCATCAACTACAGCTACAggagtaccggTGGGAGGACCAGGCGTAGCCACAGAGGTGCCAGACAGGCGGGGGTTGCGAGACTGGGGACCCCGACGCACCGGAgcgaagaagagagtgagcgcttggacgcccacggggtctaggagcaggtTTTCCAGGGTGACGAGCATGAAATTCGGCCAGTACAGCAGGATTCCAGACGTCACGGCgggcaacccagcaacgctcctcagggctCGTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682138.1 True 2648 mRNA 0.42 5 6551253 6564327

Neighbor

gene id symbol gene type direction distance location
LOC103028415 NA coding upstream 425469 6101885 ~ 6125784 (+)
trnap-agg_6 NA coding upstream 705751 5845431 ~ 5845502 (+)
LOC111195263 LOC108425226 coding upstream 830785 5718040 ~ 5720468 (+)
LOC111195187 cyp4v8,LOC108415372,LOC107656409,LOC107754133,LOC107562739,LOC106602559 coding upstream 1136272 5398879 ~ 5414981 (+)
LOC111195186 NA coding upstream 1175189 5367516 ~ 5376064 (+)
LOC111195195 NA coding downstream 46262 6610589 ~ 6618713 (+)
LOC111195266 NA coding downstream 76220 6640547 ~ 6642395 (+)
LOC103027465 chrnb2a,LOC108412405,LOC107656869,LOC107548317,LOC107562601,LOC107702400 coding downstream 140550 6704877 ~ 6732876 (+)
LOC103022127 chrna6,LOC108412407,LOC107655806,LOC107709456,LOC107750436 coding downstream 208244 6772571 ~ 6813525 (+)
LOC103031277 chrnb3a,LOC108410818,LOC107562617,LOC107702298,LOC107750476,LOC107655822,LOC107548357 coding downstream 286895 6851222 ~ 6878321 (+)
LOC111195198 NA non-coding upstream 344 6539479 ~ 6550909 (+)
G183099 NA non-coding upstream 20872 6529941 ~ 6530381 (+)
G183097 NA non-coding upstream 40189 6509311 ~ 6511064 (+)
G183086 NA non-coding upstream 53247 6478227 ~ 6498006 (+)
G183081 NA non-coding upstream 134516 6416342 ~ 6416737 (+)
G183199 NA non-coding downstream 522633 7086960 ~ 7088091 (+)
G183201 NA non-coding downstream 530382 7094709 ~ 7095233 (+)
G183209 NA non-coding downstream 548621 7112948 ~ 7115091 (+)
G183221 NA non-coding downstream 613855 7178182 ~ 7179146 (+)
G183207 LOC108443989,LOC108260977,LOC105904014,LOC105891541 non-coding downstream 626555 7190882 ~ 7201991 (+)
rnf38 rnf38,LOC107551561 other upstream 53061 6445263 ~ 6498192 (+)
pax5 pax5 other upstream 184063 6250774 ~ 6367190 (+)
G183001 pgm2 other upstream 502779 6042688 ~ 6048474 (+)
G182790 NA other upstream 1123998 5426867 ~ 5427255 (+)
LOC103029349 NA other upstream 1610119 4935583 ~ 4941134 (+)
LOC103028013 LOC108410819,LOC107548356,LOC107655813,LOC107702399,LOC107709454,LOC107562618,LOC108260988 other downstream 333153 6897480 ~ 7009923 (+)
G183215 NA other downstream 650144 7214471 ~ 7217139 (+)
tll1 tll1,LOC107548346,LOC107745060,LOC107591552 other downstream 2306510 8870837 ~ 8983969 (+)
G183387 NA other downstream 2647007 9211334 ~ 9293703 (+)
LOC111195202 NA other downstream 3274609 9838936 ~ 9844659 (+)

Expression


Co-expression Network