LOC111195266


Basic Information

Item Value
gene id LOC111195266
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 6640547 ~ 6642395 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682139.1
ATGAGCGATCCATCATCAGCTTTAAATGACTTAATCAAGAAAAGTGTTGAACTCGGGTCAGGTCCACCATCTGTGCGCCGTCTACTTACAACAAGAAGTAATCTAGATGATGGTGGAAAGATCAGAAAGTGGACATTCGGACAGCAATACGCCAATATGCAGAATAAAACTATACTGATGGTGGGAGAAACAGGAACAGGCAAGACCACTCTGATCAACACCATGGTCAATTACTATCTGGGGGTGAAGTTTGAGGATCACGTGTGGTTTGAGATCACAGAAGAACAAAAGACAGATCAAACAGAATCTAAAACATCTGAAATCACTGTGTATGAGATAATCTCTGAAGAAAAAACCTTCTCTCTTACCATCATTGATACTCCAGGATATGGAGACACCAGGGGAATGAATAAGGACATGGAAATTCCTCGGAATCTGTGTAACCTGTTTGCACACAATGATGGAGTGAAGGATCTGGATGCTGTGTGTCTTGTATTGAAAGCATCTCAGAACAGAATCACAGAGAGGCAGCGCTACATCTTCGATGCAATTCTCTCCTTATTCGGTAAAGACATAGGAGAGAATATAGTGCTTTTGATTACATTCTCAGATGGATTTACTCCAACagatgtttttgaagctgttaagaaagaaaaaatcccCTGCTGTTACAATGCTGAGAATGAGCCTGTTCATTTTCTGTTCAACAACCGTCAGTCTGTGATTCACGGAggaaaagtaaataaacaggCTGTCAAATCGACTTGGAAAATGGGGGAGGATAGTCTGGGGGCACTTTTTGAATTCCTGAAATCACGACAGAGAAAAAGCTTAACAATGACTGTAAATGTGCTAAAGGAGCGCATCCAGCTTGAGGCCTGTATTGAGAATTTGAAAGAACGCATAGAGTTTATTGAGGCAAAACAGAAAGAACTCACTGAAGTGCAGAACACACTTGATCAAAATAGAGAACAGATTGAGAAAGATCAGAAATGTTCTCTTACTGTAAACACAGTTTACAAAAAGAAAGTTGACATAACAGATGCTTCATGGTGGAACCGAAAAGCAACCTGCTGTAATGTGTGTGAGGAGAACTGCCATGAGTTTGGCTGCTGGTGGACTACCAGTGCCAGCAAATGTGAAGTAATGAAGAATAACTACTGCACTGCATGTAACTGCCACTGCAGTAAACACGTAAAAGAGGCCAAGAAGTACGTAACACAACggaaagaagaaaaagtcaCGCTTGAAGAACTGAAAACTAAATACAGTAACAAAGATGTTACTTATGatgaaaatgcatttaaaagtatgaaaaaagAGCATGAAAAAATGCTGGAAAAGAGAAAAGGGATGACAGACCTAGAAGGCAGCCTGAAAAACCTTCTAGTggagaatgaaaaaaagaagaagagctcTGTGAAAAAAGCTTATCTGATTATCACAAAGCTGTCTGATATTGCATTAAAACCAGACTCTGCCTCCACCATTCAGCACCTTGACTTCCTGATTCCTCGAATTGAAGAAGCTGGGGAAGTAGCATGGACCCAGAACCTGAAGGAGCTCCAGAAAGCAGCAGTCAAAGAATCAGCTAAAACTACAGTGGGATATGTAATGATGATGAAGAAATTCTTTAGTTAAAATTTACATGGCTTCGCTTTAACACAACAGAAGAAGCATATTCGAAAATAAAGGAGCAACTGATTACAGTTCTAAATCAATTTTGACATAACTGTTTTTTAGGACACTTCCATAGAAATATCAGAATATCTACAATCTAACCACATTTGTTTGACAACCTTGTAAGATGAACTCAACAAAGAACTTACTTACTAaaagttttactttt

Function

GO: NA

KEGG:

id description
ko04664 Fc epsilon RI signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682139.1 True 1849 mRNA 0.39 1 6640547 6642395

Neighbor

gene id symbol gene type direction distance location
LOC111195195 NA coding upstream 21834 6610589 ~ 6618713 (+)
LOC111195264 NA coding upstream 76220 6551253 ~ 6564327 (+)
LOC103028415 NA coding upstream 514763 6101885 ~ 6125784 (+)
trnap-agg_6 NA coding upstream 795045 5845431 ~ 5845502 (+)
LOC111195263 LOC108425226 coding upstream 920079 5718040 ~ 5720468 (+)
LOC103027465 chrnb2a,LOC108412405,LOC107656869,LOC107548317,LOC107562601,LOC107702400 coding downstream 62482 6704877 ~ 6732876 (+)
LOC103022127 chrna6,LOC108412407,LOC107655806,LOC107709456,LOC107750436 coding downstream 130176 6772571 ~ 6813525 (+)
LOC103031277 chrnb3a,LOC108410818,LOC107562617,LOC107702298,LOC107750476,LOC107655822,LOC107548357 coding downstream 208827 6851222 ~ 6878321 (+)
primpol NA coding downstream 817534 7459929 ~ 7478267 (+)
LOC111195272 NA coding downstream 870302 7512697 ~ 7514718 (+)
LOC111195198 NA non-coding upstream 89638 6539479 ~ 6550909 (+)
G183099 NA non-coding upstream 110166 6529941 ~ 6530381 (+)
G183097 NA non-coding upstream 129483 6509311 ~ 6511064 (+)
G183086 NA non-coding upstream 142541 6478227 ~ 6498006 (+)
G183081 NA non-coding upstream 223810 6416342 ~ 6416737 (+)
G183199 NA non-coding downstream 444565 7086960 ~ 7088091 (+)
G183201 NA non-coding downstream 452314 7094709 ~ 7095233 (+)
G183209 NA non-coding downstream 470553 7112948 ~ 7115091 (+)
G183221 NA non-coding downstream 535787 7178182 ~ 7179146 (+)
G183207 LOC108443989,LOC108260977,LOC105904014,LOC105891541 non-coding downstream 548487 7190882 ~ 7201991 (+)
rnf38 rnf38,LOC107551561 other upstream 142355 6445263 ~ 6498192 (+)
pax5 pax5 other upstream 273357 6250774 ~ 6367190 (+)
G183001 pgm2 other upstream 592073 6042688 ~ 6048474 (+)
G182790 NA other upstream 1213292 5426867 ~ 5427255 (+)
LOC103029349 NA other upstream 1699413 4935583 ~ 4941134 (+)
LOC103028013 LOC108410819,LOC107548356,LOC107655813,LOC107702399,LOC107709454,LOC107562618,LOC108260988 other downstream 255085 6897480 ~ 7009923 (+)
G183215 NA other downstream 572076 7214471 ~ 7217139 (+)
tll1 tll1,LOC107548346,LOC107745060,LOC107591552 other downstream 2228442 8870837 ~ 8983969 (+)
G183387 NA other downstream 2568939 9211334 ~ 9293703 (+)
LOC111195202 NA other downstream 3196541 9838936 ~ 9844659 (+)

Expression


Co-expression Network