LOC111195272


Basic Information

Item Value
gene id LOC111195272
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 7512697 ~ 7514718 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682145.1
acacagacagacagacagatagacagagagacagtaaCTCAGCGTTTTAGTCGTTTCTAGAACTCATTCATAGATCAGACATGCCTGAGAACATTTACAGCAATGAGATAAGCATCGAGGAGCTGAACAGAGGAGATaaagtggagagggtggtgGAGATCTACGAGAGCACAGACACTATTAGATACCATGACCTCAACACAGAGGTGAAGGGTGGCGAACCAGAGGAAACCAAACTAAAGAGGAAGCCGCAAACAGAACAAGGAGGAGCAGATACCCATTTAGTAGAGAACAGAAGATACAGGCTGGCTGCAGTGGGTCTTGGTTTGGTTATGCTGTGTGTTCTCATGCTGTTGGCCATCATACTGCTGTGGATTAGGCTCAACAACCTGACAGGAGAGAGAGATCAATACAAGAAGCAGCTTTCAGAAACTGTTAACTACACCCAGCAGGGATGGAGGGTCTTCAACACCAGTCTTTACTACGTCTCTACTGAAATGAGGAGCTGGAATAGGAGCAGAAACTACTGTAGAAAGAGAGGATCAGACCTGCTGATCATCAACAGCAAAGAAGAACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682145.1 True 578 mRNA 0.46 3 7512697 7514718

Neighbor

gene id symbol gene type direction distance location
primpol NA coding upstream 34430 7459929 ~ 7478267 (+)
LOC103031277 chrnb3a,LOC108410818,LOC107562617,LOC107702298,LOC107750476,LOC107655822,LOC107548357 coding upstream 634376 6851222 ~ 6878321 (+)
LOC103022127 chrna6,LOC108412407,LOC107655806,LOC107709456,LOC107750436 coding upstream 699172 6772571 ~ 6813525 (+)
LOC103027465 chrnb2a,LOC108412405,LOC107656869,LOC107548317,LOC107562601,LOC107702400 coding upstream 779821 6704877 ~ 6732876 (+)
LOC111195266 NA coding upstream 870302 6640547 ~ 6642395 (+)
LOC103036243 LOC108439191 coding downstream 1112636 8627354 ~ 8739863 (+)
klhl2 klhl2,LOC107655955,LOC107745059,LOC107591556,LOC107702385 coding downstream 1237409 8752127 ~ 8778943 (+)
msmo1 msmo1,LOC107750426,LOC107702386,LOC107655978 coding downstream 1270162 8784880 ~ 8793907 (+)
cpe cpe,LOC107745061,LOC107548348,LOC107591555 coding downstream 1286426 8801144 ~ 8846414 (+)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 coding downstream 1575565 9090283 ~ 9184039 (+)
G183293 NA non-coding upstream 13215 7480385 ~ 7499482 (+)
G183289 ncapd3 non-coding upstream 53993 7433978 ~ 7458704 (+)
G183251 wdr19 non-coding upstream 95667 7411797 ~ 7417030 (+)
G183241 NA non-coding upstream 112101 7347476 ~ 7400596 (+)
G183248 wdr19,LOC107591558 non-coding upstream 115313 7394430 ~ 7397384 (+)
G183312 NA non-coding downstream 1187708 8702426 ~ 8742973 (+)
G183361 NA non-coding downstream 1486137 9000855 ~ 9039749 (+)
G183376 NA non-coding downstream 1666222 9180940 ~ 9512425 (+)
G183389 NA non-coding downstream 1768891 9283609 ~ 9288142 (+)
G183391 NA non-coding downstream 1790677 9305395 ~ 9306685 (+)
G183215 NA other upstream 295558 7214471 ~ 7217139 (+)
LOC103028013 LOC108410819,LOC107548356,LOC107655813,LOC107702399,LOC107709454,LOC107562618,LOC108260988 other upstream 502774 6897480 ~ 7009923 (+)
LOC103036850 NA other upstream 847934 6523213 ~ 6664763 (+)
rnf38 rnf38,LOC107551561 other upstream 1014505 6445263 ~ 6498192 (+)
pax5 pax5 other upstream 1145507 6250774 ~ 6367190 (+)
tll1 tll1,LOC107548346,LOC107745060,LOC107591552 other downstream 1356119 8870837 ~ 8983969 (+)
G183387 NA other downstream 1696616 9211334 ~ 9293703 (+)
LOC111195202 NA other downstream 2324218 9838936 ~ 9844659 (+)
LOC111195140 NA other downstream 2550134 10064852 ~ 10072047 (+)
LOC111195207 LOC107375340,LOC106958509,LOC105896809,LOC107671222,LOC107690788 other downstream 2583828 10098546 ~ 10101547 (+)

Expression


Co-expression Network