LOC111195161


Basic Information

Item Value
gene id LOC111195161
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 725081 ~ 739466 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651498.1
GGGGCTTTAAAGCAGGATTTTGCTTGTTTTACTCTTAATAATATGGAAAAACAGCCTCTAACAGGCTTTATGAACAGTTGTAGAGgttaaaaatgcatgtaaagtGTCCTAAAGTGGCATAAAATACCCAGTTTCAGAGTTTGAAAGTGTTAATTCTCCCTGAAGCCGGTTAAACTTTGTGTATTGGTGAAGAGAAGCTCAGgctgttttatttggtgGGAAAAGCGAACGAACTTCCCAAGCTGAAACTACACTTCCCAGAGTTCTGTGCGAGGGACGACTGCGGGGCGAGCACGCGGAGAGACCGACAGACAGACGCAGGTATTTGGACCCACAATGCACTGTGATGGCTGGTTTGAAGATTCAGTTTTGACTTCTTCAGGAAGTCCTGGGAATGACAATGGCGGCGCCTTCACAGAGCTCCATTGAGACATGTTATTaagtgaggaaatagtccagtaggtgacagaataactatgagtaa

Function

GO:

id name namespace
GO:0000003 reproduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651498.1 True 484 lncRNA 0.44 3 725081 739466

Neighbor

gene id symbol gene type direction distance location
suclg1 suclg1 coding upstream 184947 509651 ~ 540134 (+)
LOC103047018 LOC108434388 coding upstream 229659 475671 ~ 495422 (+)
bdh2 bdh2,LOC107746975 coding upstream 249727 463323 ~ 475354 (+)
tacr3 tacr3a,tacr3,LOC108411976,LOC107552719,LOC107746781,LOC107674253,LOC107556806 coding upstream 298567 378228 ~ 426514 (+)
LOC103042564 si:dkey-22i16.2,LOC108260510,LOC108434387,LOC107746771,LOC107674260,LOC107556780 coding upstream 383639 332130 ~ 341442 (+)
lrrtm1 lrrtm1,LOC107706126,LOC107551676,LOC107689474,LOC107558618 coding downstream 408632 1148098 ~ 1153043 (+)
LOC103025599 NA coding downstream 651945 1391411 ~ 1412738 (+)
uchl1 uchl1,LOC107548360,LOC107709457 coding downstream 701984 1441450 ~ 1446518 (+)
LOC103024236 NA coding downstream 708236 1447702 ~ 1517348 (+)
exosc9 exosc9,LOC107656918,LOC107702358,LOC107746036,LOC107591532 coding downstream 779213 1518679 ~ 1527400 (+)
G181934 NA non-coding upstream 48874 675919 ~ 676207 (+)
G181927 NA non-coding upstream 61562 629907 ~ 663519 (+)
G181821 NA non-coding upstream 224100 492598 ~ 500981 (+)
G181820 NA non-coding upstream 279783 445081 ~ 445298 (+)
G181816 NA non-coding upstream 291514 432539 ~ 433567 (+)
LOC103046702 NA non-coding downstream 175793 915259 ~ 993969 (+)
G181955 NA non-coding downstream 178864 918330 ~ 924178 (+)
G181982 NA non-coding downstream 635731 1375197 ~ 1378219 (+)
LOC111195170 NA non-coding downstream 807735 1547201 ~ 1554782 (+)
G182006 NA non-coding downstream 816135 1555601 ~ 1555846 (+)
G181818 NA other upstream 332951 391614 ~ 392130 (+)
LOC111195149 NA other upstream 334915 289010 ~ 390166 (+)
LOC111195150 NA other upstream 418769 300095 ~ 306312 (+)
G181801 NA other upstream 438800 282076 ~ 286281 (+)
G181799 NA other upstream 446908 276671 ~ 278173 (+)
LOC103029952 fgf20,fgf20a,LOC108412830,LOC103364653,LOC108432889,LOC107747399,LOC107721420,LOC107554387,LOC107702330,LOC107657011 other downstream 1718098 2457564 ~ 2460672 (+)
LOC111195173 NA other downstream 1786217 2525683 ~ 2569294 (+)
G182356 NA other downstream 2516901 3256367 ~ 3258850 (+)
G182361 NA other downstream 2548472 3287938 ~ 3290258 (+)
G182577 pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 other downstream 3630451 4369917 ~ 4431946 (+)

Expression


Co-expression Network