LOC111195214 (LOC106533383)


Basic Information

Item Value
gene id LOC111195214
gene name LOC106533383
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 11016300 ~ 11018394 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651525.1
ATAAGACAAATCCAAACGCTTTAAGATCTGTTTTAAGGTCTTTGTGAACACTTTTATAGTTAACATAAATACACCATAGTTCTGAAGCATACTAGTATGATCATtcttattaacattattataagtagtagtattagtactaTTATTGtatttgactttgactttgtagTTAAAATGCACACTAAAGTCTAGCTACTCAACTAAACTCGGGATGAATACATTTGCTTATTTGCCTTGTGTTGAAAGCAATTTCATGTCTGTGGCACTGAAATATACGTGAAGGAAAGACGTTAAACAAGCTAGCTCATGTCAGCTAGCTTAGTAAGCtctatagctagctagctaactgctaCGCAGGCTAGAAAAACCGGGGAAAGTTGCAGCGTTACTGAATAGTTTAGTCAACTAGCTTATAGATAACGGTATAACACACAAAACCTACCGTCTCGCTCATCTGTTGAGATTTGGGTCTTTTGTTGACGCTTTGGGAGCCTCTTTGGACGAGTACTGGAAGCAGAAGTTGCTGAGGAACAGGGTTCTTTTTCATGCTGACCGTCCATGATTTTTCAGGCAAAAAATAAACGTTGTCCTTACGGTTTGCAAGTCCTGACGGGATGATGGCATGAGTCATCAACAAGTTTGACTGTGATTGGATGCTTCTGTAACATCGGCTGCGGTTGGATCTATACTTTCTAGCGCCAAAATcttgtttagtttgtattttCAGAAGCAGAGGGCACCTAAGAGATATCCAAAACAGGTAAGCAATCTCTTAAcgaatatttttgtcatttgtaaACATGTACGATCTATTTAAACAGCAGGATAAATGCAATGAGATCAAAACGAATGATTATGCAGTCCTATACTGTGTAAAAGCTTGAAAACCCTTATATTTTCAAACTACTCCATTGGTCCGTGCACAACCCAGTACTAACTTCACTCTGTTTCTGGTTGTTATTGCAAGGCTTCATATAAGctggtttaatttatttatcaaaaacctattaattcattaatttgttGTTTTCACTGTTCAGACGTTTAACTTAACTATTTTGGATTCTATTATATTGTGCTTTAGTGTATAGTTTTACTTGTGTGAATTGTTTTTTCCATATAAATGAAATGGCTATACATATAACTAAAAAGCTTGTATAATAAGGTATTTCAGAAATGTTCTTGACAATTGTCGGTGTATACACCTTCAGCAGAATGTCACTGGAAAGAAAGTTACGGGCCCGGATagagggaaaacaaacaaagcgcAAGACATTGAAGCTAATTAAGTGGTTGCAGAGGAAACACCTTCTGAAGGAGAAGCTCAGATGCCCTCTCTGCTtccacaaaatgaaaatgttctcCGTGACAAAGAAGGACCAGTACATCTGGTGCTGTAAAAGAGGTCATAAAAGAGTCTCAAAAACCATCAGAGCTGGCTCCCTCTTTGAAAAGTCTAAATCATCTCTCTTCAACTGGATGAAGTATATTTACAGATTCTCACAAGGACTGAGGCTCAGGCAGATTGATATGATCAGTGATGACATTGCTGGCAGCTCTACAACTTTGTCTAAAATGGCAAGATGCATTCGAAGGGTCTGCATTTGTGCAATGGAAAGACAAAGAAGAAAGAACAGGCAGTGTCTTGGTGGTCGAAAAGAATTTGTTGTGATAGATGAGAGCTGCTTCCGTCATCAG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106533383

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651525.1 True 1698 lncRNA 0.38 3 11016300 11018394

Neighbor

gene id symbol gene type direction distance location
LOC111195211 NA coding upstream 856198 10158783 ~ 10160102 (+)
LOC111195210 NA coding upstream 861469 10149938 ~ 10154831 (+)
LOC111195208 LOC107690133,LOC107745493,LOC107715185,LOC107581013,LOC107738483,LOC107756941,LOC107569589,LOC107740227,LOC108419634,LOC108417841 coding upstream 911799 10103854 ~ 10104501 (+)
LOC111195205 NA coding upstream 1019458 9995609 ~ 9996842 (+)
LOC111195273 NA coding upstream 1030609 9984612 ~ 9985691 (+)
LOC103043730 lhcgr,LOC108412992 coding downstream 373100 11391494 ~ 11402281 (+)
rtn4 rtn4,LOC108412986 coding downstream 437886 11456280 ~ 11479384 (+)
LOC103044327 LOC108429269,LOC108260508,LOC108260727,LOC105890925,LOC106577117 coding downstream 486292 11504686 ~ 11510392 (+)
LOC103040140 NA coding downstream 613411 11631805 ~ 11634990 (+)
LOC107197667 crgm2,LOC103042598,LOC108427436,LOC108427435,LOC108441183,LOC108260664,LOC108260583,LOC108260584,LOC108260580 coding downstream 1517374 12535768 ~ 12536662 (+)
G183803 NA non-coding upstream 171610 10844195 ~ 10844690 (+)
G183796 NA non-coding upstream 354355 10661643 ~ 10661945 (+)
G183795 NA non-coding upstream 356887 10659002 ~ 10659413 (+)
G183787 NA non-coding upstream 438008 10575956 ~ 10578292 (+)
G183770 NA non-coding upstream 569526 10446559 ~ 10446774 (+)
G183819 NA non-coding downstream 50659 11069053 ~ 11082162 (+)
G183878 NA non-coding downstream 193243 11211637 ~ 11211972 (+)
G183882 NA non-coding downstream 327225 11345619 ~ 11345970 (+)
G183886 NA non-coding downstream 354077 11372471 ~ 11372845 (+)
G183887 NA non-coding downstream 363030 11381424 ~ 11381794 (+)
rnf24 rnf24,LOC107551705,LOC107689472 other upstream 699000 10261584 ~ 10317300 (+)
LOC111195212 LOC108414267,LOC106946373,LOC103130468,LOC102227983,LOC108269716,LOC108261415,LOC105936005,LOC107386469,LOC107577828,LOC107569598,LOC107677420 other upstream 845197 10145453 ~ 10171103 (+)
G183680 NA other upstream 857593 10151967 ~ 10158707 (+)
G183671 NA other upstream 905559 10109866 ~ 10110741 (+)
LOC111195207 LOC107375340,LOC106958509,LOC105896809,LOC107671222,LOC107690788 other upstream 914753 10098546 ~ 10101547 (+)
G183892 rps27a other downstream 380668 11399062 ~ 11431926 (+)
clhc1 NA other downstream 413590 11431984 ~ 11456373 (+)
ppp1r21 ppp1r21,LOC107578819 other downstream 464658 11483052 ~ 11503479 (+)
G183996 crgm2,LOC103042598,LOC108441183,LOC108427435,LOC108427436,LOC108427240,LOC108260579,LOC108260664,LOC108260583 other downstream 672507 11690901 ~ 11691936 (+)
LOC111195141 LOC107096934,LOC108427427,LOC103480793 other downstream 2516668 13535062 ~ 13545495 (+)

Expression


Co-expression Network