LOC111195216


Basic Information

Item Value
gene id LOC111195216
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 14180105 ~ 14185344 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651527.1
agaaacacaaattaaacaCGGACTGAGGAGAGTGAGGAGCTTCAGGGCTTAAATTCTGCATTAAAAGCTGCAGAAAGTGAAAAAGCCCTTCATCAACAAATGCTGTCATCAGGACTGACCACAGAGTTGCAGAGCCTGCACCTTCTTCACTCCCACATGAGACAACGTGAACTGCCTTGAACACATCCACAAGAGACTTGGGATGACAGAAGCGACTTCTCACTGCTAGAGTGAAGGTAGGGTAAGACTCTGGAATCATTACAGTTCTTTTGTTAGAGTGTTATAAACCATTTGAAAA

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651527.1 True 298 lncRNA 0.43 3 14180105 14185344

Neighbor

gene id symbol gene type direction distance location
drap1 drap1,LOC106608686 coding downstream 121470 14050730 ~ 14058635 (-)
LOC103028152 NA coding downstream 352206 13813398 ~ 13827899 (-)
LOC103027614 LOC103027614 coding downstream 372776 13799521 ~ 13807329 (-)
mpdz mpdz coding downstream 1301085 12816580 ~ 12879020 (-)
LOC103046990 rasgrp2,LOC108427446,LOC108261011,LOC106608563 coding downstream 1419174 12707652 ~ 12760931 (-)
lurap1l lurap1l coding upstream 2332 14187676 ~ 14198597 (-)
LOC103033946 tyrp1,tyrp-1,LOC108260967,LOC105903131 coding upstream 14879 14200223 ~ 14207686 (-)
LOC103042598 crgm2,LOC103042598,LOC108427435,LOC108427436,LOC108260664,LOC108260584,LOC108260580,LOC108441183,LOC108260581 coding upstream 153370 14338714 ~ 14340598 (-)
LOC103043225 NA coding upstream 1074033 15259377 ~ 15261518 (-)
LOC103042179 NA coding upstream 1079764 15265108 ~ 15303915 (-)
G184422 LOC104965148,LOC104966956,LOC103385808 non-coding downstream 49010 14128528 ~ 14131095 (-)
G184396 NA non-coding downstream 251792 13928106 ~ 13928313 (-)
G184354 heatr5b non-coding downstream 343687 13834781 ~ 13836418 (-)
G184338 NA non-coding downstream 450162 13724758 ~ 13729943 (-)
G184330 NA non-coding downstream 502327 13676337 ~ 13677778 (-)
G184447 NA non-coding upstream 150602 14335946 ~ 14336641 (-)
LOC111195232 NA non-coding upstream 768100 14953444 ~ 15001573 (-)
LOC103043324 NA non-coding upstream 862403 15047747 ~ 15052870 (-)
G184818 NA non-coding upstream 1187428 15372772 ~ 15379206 (-)
G184816 gtf2e2,LOC107671915,LOC107548363 non-coding upstream 1199370 15384714 ~ 15387101 (-)
LOC103032041 NA other downstream 63649 14063644 ~ 14116456 (-)
trnas-gcu_6 NA other downstream 88515 14091509 ~ 14091590 (-)
trnas-gcu_5 NA other downstream 90318 14089706 ~ 14089787 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other downstream 139860 13988809 ~ 14040245 (-)
LOC111195226 NA other downstream 585352 13551132 ~ 13594753 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other upstream 1124165 15309509 ~ 15340580 (-)
smim18 smim18 other upstream 1191314 15376658 ~ 15381208 (-)
smim14 smim14 other upstream 1480767 15666111 ~ 15671954 (-)
lrat lrat other upstream 2712834 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 3044741 17230085 ~ 17241027 (-)

Expression


Co-expression Network