LOC111195227


Basic Information

Item Value
gene id LOC111195227
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 13334495 ~ 13338071 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651542.1
ACGCTCCCGAAATTGGGAGTTGTCCATCGGTCTCGTGCCAGATCTGCCGGTACCCCTACTGGTGGGTCGAGACTACCCAAACTTTGACGAGGAACTGCGGGGCAAACCGGAGAGGAGAATGACCCCTCGTAGGAGGAGGAAGCGCCGGCCCGTTGCTCCCCGCGCTCTGGCCGCCAGCGCCCACTCAGGCAGCAGTGAGCCAGCCTCAGAAGAATCCTGACCCGCAGTGTGAGCCGCCGTGTCCGGGACTCCAGGACCCTTCTGCCAGCCCGAAGAGGAGCTCATACCCTCCTGCGGACTGGCTCTGGACTCAGCCTCCGGCCCTGCCCCGGCTGATCCCACAAGGAGTGGGCTGCAGAGCTAAAGACTGAACTTTTTCCTTTTGTCTGTGAAAGACTCTAAATAAATTCCCCTTCGGGGTTGTTTAAGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651542.1 True 432 lncRNA 0.60 2 13334495 13338071

Neighbor

gene id symbol gene type direction distance location
LOC103047288 LOC108427443 coding upstream 68095 12899191 ~ 13266400 (+)
LOC103041365 LOC108427445 coding upstream 542212 12765229 ~ 12792283 (+)
LOC107197667 crgm2,LOC103042598,LOC108427436,LOC108427435,LOC108441183,LOC108260664,LOC108260583,LOC108260584,LOC108260580 coding upstream 797833 12535768 ~ 12536662 (+)
LOC103040140 NA coding upstream 1699505 11631805 ~ 11634990 (+)
LOC103044327 LOC108429269,LOC108260508,LOC108260727,LOC105890925,LOC106577117 coding upstream 1824103 11504686 ~ 11510392 (+)
hgfac NA coding downstream 292471 13630542 ~ 13654273 (+)
LOC103042284 LOC103042284,LOC108427430 coding downstream 369618 13707689 ~ 13709643 (+)
slc24a2 slc24a2 coding downstream 397175 13735246 ~ 13785212 (+)
heatr5b heatr5b coding downstream 491759 13829830 ~ 13856036 (+)
LOC103029182 LOC108429273,LOC108260865 coding downstream 518898 13856969 ~ 13906069 (+)
G184192 NA non-coding upstream 36380 13297784 ~ 13298115 (+)
G184182 NA non-coding upstream 203697 13077958 ~ 13130798 (+)
G184171 NA non-coding upstream 278782 12956175 ~ 13055713 (+)
LOC111195224 NA non-coding upstream 525348 12807264 ~ 12809147 (+)
LOC111195222 NA non-coding upstream 530773 12798756 ~ 12803722 (+)
G184201 NA non-coding downstream 208091 13546162 ~ 13550045 (+)
G184203 LOC108427427,LOC108260577 non-coding downstream 220745 13558816 ~ 13591074 (+)
G184268 NA non-coding downstream 386685 13724756 ~ 13729942 (+)
G184285 NA non-coding downstream 404957 13743028 ~ 13743451 (+)
LOC111195229 NA non-coding downstream 447807 13785878 ~ 13801142 (+)
G183996 crgm2,LOC103042598,LOC108441183,LOC108427435,LOC108427436,LOC108427240,LOC108260579,LOC108260664,LOC108260583 other upstream 1642559 11690901 ~ 11691936 (+)
ppp1r21 ppp1r21,LOC107578819 other upstream 1831016 11483052 ~ 11503479 (+)
clhc1 NA other upstream 1878122 11431984 ~ 11456373 (+)
G183892 rps27a other upstream 1902569 11399062 ~ 11431926 (+)
rnf24 rnf24,LOC107551705,LOC107689472 other upstream 3017195 10261584 ~ 10317300 (+)
LOC111195141 LOC107096934,LOC108427427,LOC103480793 other downstream 196991 13535062 ~ 13545495 (+)
LOC103025917 LOC108427442 other downstream 322076 13660147 ~ 13691164 (+)
c21h11orf68 drap1,cunh11orf68,c29h11orf68,LOC106608686,LOC107684582,LOC105923970,LOC107748024,LOC107670404,LOC103032366 other downstream 712716 14050787 ~ 14063300 (+)
G184594 NA other downstream 1921305 15259376 ~ 15261534 (+)
chrna9 chrna9,LOC107548308 other downstream 2402147 15740218 ~ 15750689 (+)

Expression


Co-expression Network