LOC111195229


Basic Information

Item Value
gene id LOC111195229
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 13785878 ~ 13801142 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651545.1
atatatatatatatatatatatatttaaagggttagTAAACACACATATGAGATGAAAATGGTTTGTTTGGCAGATGGTGATTTCCAATTTTAGGCACAAGCTTTGTCTAAAGGGGGGAACCTGTTTGTCACCTTTTATGATGTCACCATCTTGGATTCAGCTTCAGTTTTTAGATGGGAAGGTAGATGTATGACACATGAAACTGACAATTTTTCAAGTACAACAGGTGTATGTGTAccataactttatttattttcattctcCTCATGTCTCCACAGTTTGGCAGTGACTTTCAATACAATTCTGTTCAGTTCAATAAGCTTTATTGACATGACCATATTCAAATCCCAGAAAATTGACCATAAGGTTTACAAAATGTGTTGGAATTGCTGTCCACCATGTCTGAGTGTTTACACTATCATTTTCTTACgttcctgataaaaaaaaacatgtggctGAACAATTATTTTCAGcaaatctaaaatgaaaatgaacttgtgaAGGAAACATGTCTAACCATCTTAATGTTATGTGATGATCACTAAAGAAGATCCTAGAATGTGGACACCCCATACACTACACCTTAACATGACATTAGGTAAGACAACCATGTTAGATTGATCTGTCCAGTGGGGGAATGTGTCCAACCAAGTATCCAATGTTTTTCAGATGAAATTCTTTACCAGTTTAATGTGTCACACATCTATATTCCTATTTGAAAATCTAAAGCTGGATCACCATCTGCCAAAGCATTTTCCTTTAAGATggaatatactatatatatatatataaataattgatgCAACTGCATCTCACCAAGTCACTTTGACTCACCCGTGCAGTTATAGGATTTAATATGAGGATATGAGGAAAGAACTGACTTGCACTTGCTAGAACTTTCCCCCCCGAAGGTGATGGACTCACCGCTGGCTGATGCAAGTTTGCTGGTGCCTTTAAGTGCAGGTGACAAGCTCAATCCATCACCTGCAAATCAAGGCGAGTTGGAAAATGTCACCCGGCCAGCTGCCTGCCTGCGCGTGTGCAGAGGAGCCCCTCTGCATTCTCAATGCATCCGGCTTTAGAAAAGGGACCTGAGTGTAACCGCTCTGCTGCTGCAAGTCTTTTCCTCAGCATGAATGCGGAATGCAGAGGAACGCTGCACAAAGTCCTCCCTCCCTTCACTCTTCATCACACAGACGGTAATGACAGCCCACACATTCATCACTCACACGCCCAGTGTTCCACGTCAGTGTCACACCTCCGGGGTGTTCATGTAGTTGACTTAAagtgtacatatatacatatacagataTGAGCATATAACTTGTGTAAAAGAAACAGTCTATGTATAAATGCGAAggatgtaataaaataaataaaggtcaatataatatttaaaagtgtGGTTTCCTCTTGTCTGTAACTGCTGTTGTTTATGGACACTTTTGCTTtcattatcaaataaatgcaaataagtgATGTCTTAAAATATTAGATGCACCAAATGGTGGTTTTCATGGTGTTTCTGActgattgctgtggtattgcaggtgttgcaaagtggttaCAAGAGTGTTGGTGATGTTAGGTGGTGGTTAGGAAGATGCTGTCCTATCCCTGATGGCTGCTGTGGTgtctaggtggttgctcagGTGGTTTCTGTGGAGTTGCCAGGTGGTTAATAATTTGTTTGTAGGCAGTGGCTAGgaagttgctatggtgtccctgATGGCAGCTGTGGTATCTAGGAAGTTGCTCAGAGCTCTTGTTCCTGGCCCGCTCTCCATTCTGGACGGCTTTAATCGTCAGCTTTGTGAAGATGGAGTTGTCTGTGGAAGTTAAACG

Function

GO:

id name namespace
GO:0030537 larval behavior biological_process
GO:0008345 larval locomotory behavior biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651545.1 True 1846 lncRNA 0.40 3 13785878 13801142

Neighbor

gene id symbol gene type direction distance location
slc24a2 slc24a2 coding upstream 666 13735246 ~ 13785212 (+)
LOC103042284 LOC103042284,LOC108427430 coding upstream 76235 13707689 ~ 13709643 (+)
hgfac NA coding upstream 131605 13630542 ~ 13654273 (+)
LOC103041974 LOC108427427 coding upstream 259466 13305949 ~ 13526412 (+)
LOC103047288 LOC108427443 coding upstream 519478 12899191 ~ 13266400 (+)
heatr5b heatr5b coding downstream 28688 13829830 ~ 13856036 (+)
LOC103029182 LOC108429273,LOC108260865 coding downstream 55827 13856969 ~ 13906069 (+)
pld5 NA coding downstream 107033 13908175 ~ 13977078 (+)
LOC103033313 LOC103385808,LOC103366237,LOC107690779,LOC103033313,LOC102208922 coding downstream 295682 14096824 ~ 14133131 (+)
ptprd ptprd coding downstream 567883 14369025 ~ 14972802 (+)
G184285 NA non-coding upstream 42427 13743028 ~ 13743451 (+)
G184268 NA non-coding upstream 55936 13724756 ~ 13729942 (+)
G184203 LOC108427427,LOC108260577 non-coding upstream 194804 13558816 ~ 13591074 (+)
G184201 NA non-coding upstream 235833 13546162 ~ 13550045 (+)
LOC111195227 NA non-coding upstream 447807 13334495 ~ 13338071 (+)
LOC111195228 NA non-coding downstream 215 13801357 ~ 13827701 (+)
LOC111195230 NA non-coding downstream 180906 13982048 ~ 13997645 (+)
G184274 NA non-coding downstream 187750 13988892 ~ 13990906 (+)
LOC111195231 NA non-coding downstream 198875 14000017 ~ 14000904 (+)
G184310 NA non-coding downstream 228884 14030026 ~ 14040220 (+)
LOC103025917 LOC108427442 other upstream 94714 13660147 ~ 13691164 (+)
LOC111195141 LOC107096934,LOC108427427,LOC103480793 other upstream 240383 13535062 ~ 13545495 (+)
G183996 crgm2,LOC103042598,LOC108441183,LOC108427435,LOC108427436,LOC108427240,LOC108260579,LOC108260664,LOC108260583 other upstream 2093942 11690901 ~ 11691936 (+)
ppp1r21 ppp1r21,LOC107578819 other upstream 2282399 11483052 ~ 11503479 (+)
clhc1 NA other upstream 2329505 11431984 ~ 11456373 (+)
c21h11orf68 drap1,cunh11orf68,c29h11orf68,LOC106608686,LOC107684582,LOC105923970,LOC107748024,LOC107670404,LOC103032366 other downstream 249645 14050787 ~ 14063300 (+)
G184594 NA other downstream 1458234 15259376 ~ 15261534 (+)
chrna9 chrna9,LOC107548308 other downstream 1939076 15740218 ~ 15750689 (+)
G184727 slit2 other downstream 2652198 16453340 ~ 16486424 (+)
osbp osbp,LOC108434340,LOC108260600 other downstream 2688983 16490125 ~ 16532700 (+)

Expression


Co-expression Network