trnas-gcu_6


Basic Information

Item Value
gene id trnas-gcu_6
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 14091509 ~ 14091590 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnas-gcu_6
GACGaggtggccgagtggttaaggcgatggacTGCTAATCCATTGTGCTCTGCAcgcgtgggttcgaatcccatcCTCGTCg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnas-gcu_6 True 82 tRNA 0.59 1 14091509 14091590

Neighbor

gene id symbol gene type direction distance location
drap1 drap1,LOC106608686 coding downstream 32874 14050730 ~ 14058635 (-)
LOC103028152 NA coding downstream 263610 13813398 ~ 13827899 (-)
LOC103027614 LOC103027614 coding downstream 284180 13799521 ~ 13807329 (-)
mpdz mpdz coding downstream 1212489 12816580 ~ 12879020 (-)
LOC103046990 rasgrp2,LOC108427446,LOC108261011,LOC106608563 coding downstream 1330578 12707652 ~ 12760931 (-)
lurap1l lurap1l coding upstream 96086 14187676 ~ 14198597 (-)
LOC103033946 tyrp1,tyrp-1,LOC108260967,LOC105903131 coding upstream 108633 14200223 ~ 14207686 (-)
LOC103042598 crgm2,LOC103042598,LOC108427435,LOC108427436,LOC108260664,LOC108260584,LOC108260580,LOC108441183,LOC108260581 coding upstream 247124 14338714 ~ 14340598 (-)
LOC103043225 NA coding upstream 1167787 15259377 ~ 15261518 (-)
LOC103042179 NA coding upstream 1173518 15265108 ~ 15303915 (-)
G184396 NA non-coding downstream 163196 13928106 ~ 13928313 (-)
G184354 heatr5b non-coding downstream 255091 13834781 ~ 13836418 (-)
G184338 NA non-coding downstream 361566 13724758 ~ 13729943 (-)
G184330 NA non-coding downstream 413731 13676337 ~ 13677778 (-)
G184256 NA non-coding downstream 471673 13619632 ~ 13619836 (-)
G184422 LOC104965148,LOC104966956,LOC103385808 non-coding upstream 36938 14128528 ~ 14131095 (-)
LOC111195216 NA non-coding upstream 88515 14180105 ~ 14185344 (-)
G184447 NA non-coding upstream 244356 14335946 ~ 14336641 (-)
LOC111195232 NA non-coding upstream 861854 14953444 ~ 15001573 (-)
LOC103043324 NA non-coding upstream 956157 15047747 ~ 15052870 (-)
trnas-gcu_5 NA other downstream 1722 14089706 ~ 14089787 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other downstream 51264 13988809 ~ 14040245 (-)
LOC111195226 NA other downstream 496756 13551132 ~ 13594753 (-)
LOC111195225 NA other downstream 787829 13226333 ~ 13303680 (-)
G184051 NA other downstream 1894851 12195212 ~ 12196658 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other upstream 1217919 15309509 ~ 15340580 (-)
smim18 smim18 other upstream 1285068 15376658 ~ 15381208 (-)
smim14 smim14 other upstream 1574521 15666111 ~ 15671954 (-)
lrat lrat other upstream 2806588 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 3138495 17230085 ~ 17241027 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_10167646_10169639 NA coding CI01000304 null 10166187 ~ 10169639 (-)
rainbow trout (Oncorhynchus mykiss) trnas-gcu-266 NA coding NC_048593.1 CM023247.2 34546304 ~ 34546385 (-)
eurasian perch (Perca fluviatilis) trnas-gcu_19 NA coding NC_053131.1 CM020928.1 25076783 ~ 25076864 (+)
striped catfish (Pangasianodon hypophthalmus) trnas-gcu_22 NA non-coding NC_047613.1 CM018559.1 14401394 ~ 14401475 (+)
tiger barb (Puntius tetrazona) trnas-gcu_111 NA coding NW_025048651.1 JAEQBD010000996.1 133530 ~ 133611 (-)
tiger barb (Puntius tetrazona) trnaa-cgc_15 NA coding NC_056704.1 CM032073.1 13441990 ~ 13442061 (-)
mexican tetra (Astyanax mexicanus) trnas-gcu_22 NA coding NW_019172828.1 APWO02000046.1 2285079 ~ 2285159 (-)