G186264


Basic Information

Item Value
gene id G186264
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 221116 ~ 254030 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU252524
AGATAACGGAGATAACAGGAGGAGCCCGGCGGTGAAGGGGTTGTGATTGGGTGGTTAGATAGGGAGGAGGGGCTTCAGGCAGGGCTGAACAGACTGATAGTAAACTGATAGATAAGGTAATAAATCAGGTGATGTGCTGCAGGGCGGGGAATGTTTATATAACTGGTTTAGTTGAGTTAAACGCGGCGGTGGCCGAGCGATCAGGTTAGTAATTATTCGGTCATGAGGACGGGTTCTTAATTCTTCTGAGGGTCCAGATGATCCAGACCTGTTCAGAACTTCTGATCCAGATGTTTTGTTCTGGACGTCGGTCTAGAGTCTGTCAGTCGttcttaaactttaaaactttacattaattttgtttggttcgttttctttaggtttaatatctgcattttgtttattgtgaaaaaatattgtttatggTGAAACCTTAAACTATGTTTTGATAAAGTAATATATAGTGCTAtgactattaaaataaataaatattaatgctAGGACTAACATGTGGATACAGGTGAGGTTTGTCCATCTGCAGAAACTCACTTTGCACTTTTAAATGTACTTCTATTCGCCTTCATTTACAAAGAAAATGAAAGTTTACAATCATACTGACTAATATATAAGATGTCTATATAAATTAGTCTAAACTGCCATTGAAATAAACCccacatgtttttaattaatacataaaagAGTTTCCTGCTTAAATCATTTTTCATCATTAATTTACCGACGTTCAGGTTTGTGTTTATAATCTGGTTCTGATTCAGAGGAAAGAGGACGGGCTGAAGTCGGCGTTTTCTCTGACGTGGTTGAGGTGGTTCATGGCGCGTTCGTACGCCGTGTTCACCGACTTCCTCACGTTACGCTTCTTCCCCTCCATCAGCCGGAGCTTATCCACCGTATCATCCACTCCCATCGGATGGAGCTTATCCAGCGGCAGCCACTGCCTGAGAACCACAACACcagaatcaatcaatcaatcaatcaatcaatttccCCCAGATTCAGTTACAATAAGAGATCTTCTGTGGAGTTAGGAGGTTAATGTAGCATTGTCCACTGTGTAGCGCAGCCTTTAGCCTAAAAACCTTCAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252524 True 1106 lncRNA 0.40 2 221116 254030

Neighbor

gene id symbol gene type direction distance location
LOC103044480 si:dkey-13a21.13,LOC108444173 coding upstream 2656 200368 ~ 218460 (+)
LOC103045901 LOC108440326,LOC108255043,LOC107727863,LOC107685673,LOC107598432 coding upstream 30759 183848 ~ 190357 (+)
LOC103025463 tfe3b,tfe3,LOC108440327,LOC105912251,LOC106582876 coding upstream 46634 167342 ~ 174482 (+)
gnl3l gnl3l coding upstream 54350 160870 ~ 166766 (+)
LOC103042837 LOC108440330,LOC108440331 coding upstream 61572 157172 ~ 159544 (+)
LOC103047032 si:dkey-183j2.10,LOC108444168,LOC107565113,LOC107685669,LOC107727882,LOC107749458,LOC107597793,LOC107691358 coding downstream 15720 269750 ~ 278183 (+)
lactbl1 lactbl1,lactbl1b,LOC107727874,LOC106582988 coding downstream 188434 442464 ~ 457409 (+)
LOC111195351 LOC108439503 coding downstream 216033 470063 ~ 472044 (+)
smarcd1 smarcd1 coding downstream 221365 475395 ~ 492764 (+)
gpd1 gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423,LOC100136539 coding downstream 241043 495073 ~ 505040 (+)
G186241 NA non-coding upstream 42338 177894 ~ 178778 (+)
LOC111195451 NA non-coding upstream 106770 113390 ~ 114346 (+)
LOC103041000 NA non-coding upstream 111942 107081 ~ 109174 (+)
G186215 NA non-coding upstream 117252 26289 ~ 103864 (+)
G186279 NA non-coding downstream 39425 293455 ~ 294062 (+)
G186368 NA non-coding downstream 59930 313960 ~ 340818 (+)
G186375 NA non-coding downstream 168873 422903 ~ 423811 (+)
G186385 NA non-coding downstream 241674 495704 ~ 498408 (+)
G186401 NA non-coding downstream 304922 558952 ~ 563539 (+)
G186231 NA other upstream 106029 107396 ~ 115087 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other downstream 256545 510575 ~ 538216 (+)
podxl2 NA other downstream 352803 606833 ~ 1095337 (+)
G186880 lmcd1 other downstream 2726467 2980497 ~ 3002015 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other downstream 3138357 3392387 ~ 3394843 (+)
p3h1 NA other downstream 5525861 5779891 ~ 5798979 (+)

Expression


Co-expression Network