G186410


Basic Information

Item Value
gene id G186410
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 626712 ~ 628123 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU252751
TAGTACATACAGTAATTAGGGGTCTATTATGTGAAAAATACTTTCTTACTTGCAATTATACTTATATAGCATCATTTAAGAGTATTTAATtgacctgatctccatgtttttggactgtccACCCaagtagggacttgaacccaagaccccagtgctgaggAGGCTGCTGTGCCGCCCTTGCTGTAATAAACATCCTGTTAAGCAAATTGTAGAGAATGAACTGTGACCCAACAGCAAGTACTATTGATTTACACAGAACAGACCCCAAATTATGTgctaatacatttaatacagtataaagcTTTAAAACCGAAAAGAGCCCGTTGTGacgtactgtatgtgtgttacagaccctttaaaagctgtgtaaagtaAAAAACTAATTGTATGAACTCTGTATTGAGCAAATAACCAAACAATAATAAGCTCCTAATTTATGTTCCTTTAAATAAGCCATTACCCATACATAGTGTTCTAGCTGTAGCATCAGTGTAGTAGTATCATCCCATACATACTGTTTAAGCTGGTATCAGCGTCATCATAGTCAATAGGTAGTTCTGAGTTGAATTCATTTTAATCGATTTTTCATAGATAAAGGAGATGTTAAATATTTCTGCCTggttaaaacaaacactgtgtaaagtATATAAGGCATATACTGTAAGTTCAttgtagtatatggagtatatttAGACTTACTGCAATCTGATTTTCTAAGTGTCCAgaatgcatacctgtcaagtctcccgttttggccgggaaactaccgtattttactcctctttcccgccgtcctcccgcattagtattttcccgtaaatttcccgtattatattaaaataaaaaaatatatattattgaggagacagggcactgaccgctctgtgtctcttaaccaatcgtggagccggttcaaggagaaagtcccgcctttcaggagaaacagccaatcagcttgcaaaggagggtcagtgtggggaagccccccgtcgctgtgagttcaggcagctagtcggagctgctgatgttaaaacagatctggatattcagagatttttctaaaagaaaggtaacggtaggctaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252751 True 1084 lncRNA 0.39 2 626712 628123

Neighbor

gene id symbol gene type direction distance location
mcm2 mcm2,LOC107718478 coding upstream 25705 587222 ~ 601007 (+)
ccdc51 ccdc51 coding upstream 40908 582798 ~ 585804 (+)
LOC103029902 NA coding upstream 48810 569183 ~ 577902 (+)
bcdin3d NA coding upstream 83182 541330 ~ 543530 (+)
gpd1 gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423,LOC100136539 coding upstream 121672 495073 ~ 505040 (+)
lsm3 lsm3,LOC107676354,LOC107562728,LOC100705055 coding downstream 15662 643785 ~ 647255 (+)
slc6a6 slc6a6,slc6a6b,LOC107719944,LOC107567309,LOC107676359,LOC107562730 coding downstream 100422 728545 ~ 767457 (+)
LOC103033844 cand2,LOC107691187,LOC107719941,LOC107557972,LOC107720354,LOC107657311 coding downstream 363811 991934 ~ 1005603 (+)
LOC103042257 LOC108436685 coding downstream 385281 1013404 ~ 1026063 (+)
LOC103043017 NA coding downstream 400432 1028555 ~ 1038177 (+)
G186409 NA non-coding upstream 335 615318 ~ 626377 (+)
G186401 NA non-coding upstream 63173 558952 ~ 563539 (+)
G186402 NA non-coding upstream 65200 559399 ~ 561512 (+)
G186385 NA non-coding upstream 128304 495704 ~ 498408 (+)
G186375 NA non-coding upstream 202901 422903 ~ 423811 (+)
G186416 NA non-coding downstream 33446 661569 ~ 662228 (+)
G186436 NA non-coding downstream 271818 899941 ~ 905045 (+)
G186440 NA non-coding downstream 311252 939375 ~ 976150 (+)
G186447 sec13,LOC107657312,LOC102785664 non-coding downstream 341362 969485 ~ 991047 (+)
G186449 NA non-coding downstream 368639 996762 ~ 1076400 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 88496 510575 ~ 538216 (+)
G186231 NA other upstream 511625 107396 ~ 115087 (+)
G186880 lmcd1 other downstream 2352374 2980497 ~ 3002015 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other downstream 2764264 3392387 ~ 3394843 (+)
p3h1 NA other downstream 5151768 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 6449042 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 6564031 7192154 ~ 7192226 (+)

Expression


Co-expression Network