G186440


Basic Information

Item Value
gene id G186440
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 939375 ~ 976150 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU252799
ttgttatcagcagagggaagctgtaagatatgaagtgctgtaagattttgtgggaaaacaaaactgcactgactttagacttgataataaaacacagtggatcaacaccagcagatgacagacatgtctctccaaacgaaccatcactgatcatcagtaaattttacatttcatttaaaggaaatcaagggatcagagtctggaggaagagtggagagacacacagtccaaactgctcgagatctagtgtgaagtttccaccaatcagtgatttcattttccagcaggacttggcacactgccca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252799 True 305 lncRNA 0.41 3 939375 976150

Neighbor

gene id symbol gene type direction distance location
slc6a6 slc6a6,slc6a6b,LOC107719944,LOC107567309,LOC107676359,LOC107562730 coding upstream 171918 728545 ~ 767457 (+)
lsm3 lsm3,LOC107676354,LOC107562728,LOC100705055 coding upstream 292120 643785 ~ 647255 (+)
mcm2 mcm2,LOC107718478 coding upstream 338368 587222 ~ 601007 (+)
ccdc51 ccdc51 coding upstream 353571 582798 ~ 585804 (+)
LOC103029902 NA coding upstream 361473 569183 ~ 577902 (+)
LOC103033844 cand2,LOC107691187,LOC107719941,LOC107557972,LOC107720354,LOC107657311 coding downstream 15784 991934 ~ 1005603 (+)
LOC103042257 LOC108436685 coding downstream 37254 1013404 ~ 1026063 (+)
LOC103043017 NA coding downstream 52405 1028555 ~ 1038177 (+)
LOC103033530 LOC108436692 coding downstream 63972 1040122 ~ 1052816 (+)
LOC103033204 LOC108436691,LOC108255172,LOC107571036,LOC107557964,LOC793844 coding downstream 79501 1055651 ~ 1137686 (+)
G186436 NA non-coding upstream 34330 899941 ~ 905045 (+)
G186416 NA non-coding upstream 277147 661569 ~ 662228 (+)
G186410 NA non-coding upstream 311252 626712 ~ 628123 (+)
G186409 NA non-coding upstream 312998 615318 ~ 626377 (+)
G186401 NA non-coding upstream 375836 558952 ~ 563539 (+)
G186449 NA non-coding downstream 20612 996762 ~ 1076400 (+)
G186438 NA non-coding downstream 31673 1007823 ~ 1008883 (+)
G186458 NA non-coding downstream 111733 1087883 ~ 1094593 (+)
G186457 NA non-coding downstream 147396 1123546 ~ 1140605 (+)
G186641 NA non-coding downstream 413775 1389925 ~ 1390483 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 401159 510575 ~ 538216 (+)
G186231 NA other upstream 824288 107396 ~ 115087 (+)
G186880 lmcd1 other downstream 2004347 2980497 ~ 3002015 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other downstream 2416237 3392387 ~ 3394843 (+)
p3h1 NA other downstream 4803741 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 6101015 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 6216004 7192154 ~ 7192226 (+)

Expression


Co-expression Network