G186447 (sec13,LOC107657312,LOC102785664)


Basic Information

Item Value
gene id G186447
gene name sec13,LOC107657312,LOC102785664
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 969485 ~ 991047 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU252806
TAActtattaatacttttattgAAAGTTATCTTTTGTGAGGAAATTTTAttggaaaaataagaaaaaatgaatTGTAAAATTAAGAGAGTTTAGGACTGGTCTCGCCACATGGATTCATGTCTGAATGAACGATAGAACAATGTTCTGGAAAAGTCTTTTAGGCTCTCGGGCCTCATCCATCCTGTCCGTGGAGGCGTGGCCTGTTCTCCACCAGACGCTCTCCGCAGGTCTCCGCCTCACTGCTCGTTCTGCTGGGTGTCTGTGATGGAGGACAAGCCCCCCTGGCTCTTATTGACGTCACTGATGCAGGACCACTGTCCGTCCACCGACTCCTTCCACAGCGTCACCTGTTGTCTCCTCCAGATACTGCCAGGATGTTCCCGGTGATGGACCAGCTCACGTGCCAGACCACGTCGTTGAATTTGTGCAGGAGTTTAGCGGTCCAGGTGTTTCCGGAGGGATCGTCACACGTCCAGATAAACACCCTACCGtcCTGTGAGCAGCTGGCGATTGTGCTGGTGGTCAGTCCAATAGATGGAGCCCACCCTACATCTCTCACCCAATCACTGTGAGCTTCAAGTTTCTGGTCCTCCTTCCATTGGCCGTCCTCTTCTTTCCACAGCTTGACTAAGTTGTCGCAGCCCCCGGAGACGAATCTCTTGATGTAGAGGGGTTTCTGTCCTGTGGGCTGGTCTATAAGACTTCCTGGAACCACGGCTGGAGCCCAGCTCACTGCATTACAGCCAAGTGTGTGCATTATTAATCTTCTTAATGTCCCACTGTCCGTCACCGGTGTAGGTCAGAATTGAAATCGCGCCATCAGAGCTTCCACAAGCCAGAATCAAACCAAACTCATACGGCCCCCAGCAGATAGAGTTCACTGAGGAGTTGTGGCCTGTGTATTTGTACATCTTATCCCATGTCCCGTTCTCCTCTTTCCAGATAATGACTTTTCGGTCATAGGAACAGGAGGCCAGGATGTTGCCGTAGGTTGGATGAGCCCAGGCTACCTGCCACACTGGACCTTCATGCCCCCTCAAATCAGCCACAAGAATCTGTCCTCCATTCTTTACATCAAAGATCTTCACAGAGCGATCAGAGGAGCAGGTCGCCAGTCGTGTGCCATAGTAGTCCATCTGGGCATCAtgGATCATGTCCTCGTGTGAGGTATCCACTGTATTAATTACAGACACCATCTTCCTTTATTAATCCGGATCCAGAGAAACtataaaacagtaactttatcCGGAGAGAAAATCAGCCAAAGGGCAGAACTGATCTCTACGTGGCAAACCGACCGCCGGTTTCATAAAGGTTCCGGGTGGAGACACGGACCCGAATAATAGTTCCGAAGCTTCTGGATTTCAGCacaatttagtttaaaaattgAAATTAACAGAATTAATAAATGATCGGTGCATGAAAT
>TU252808
AATGTTCTTTTTGTCTTTTAGGCTCTCGGGCCTCATCCATCCTGTCCGTGGAGGCGTGGCCTGTTCTCCACCAGACGCTCTCCGCAGGTCTCCGCCTCACTGCTCGTTCTGCTGGGTGTCTGTGATGGAGGACAAGCCCCCCTGGCTCTTATTGACGTCACTGATGCAGGACCACTGTCCGTCCACCGACTCCTTCCACAGCGTCACCTGCAGCCCAAACCAACAACAACCAAGCGTCAGGAAAACACTTCTTCTAg

Function

symbol description
sec13 Predicted to enable structural molecule activity. Acts upstream of or within several processes, including animal organ development; extracellular matrix constituent secretion; and opsin transport. Located in endoplasmic reticulum exit site. Is expressed in several structures, including alar plate midbrain region; digestive system; optic vesicle; pectoral fin musculature; and skeletal element. Orthologous to human SEC13 (SEC13 homolog, nuclear pore and COPII coat complex component).

NR:

description
protein SEC13 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252806 True 1427 lncRNA 0.48 9 981434 991047
TU252808 False 257 lncRNA 0.56 2 969485 981831

Neighbor

gene id symbol gene type direction distance location
slc6a6 slc6a6,slc6a6b,LOC107719944,LOC107567309,LOC107676359,LOC107562730 coding upstream 202028 728545 ~ 767457 (+)
lsm3 lsm3,LOC107676354,LOC107562728,LOC100705055 coding upstream 322230 643785 ~ 647255 (+)
mcm2 mcm2,LOC107718478 coding upstream 368478 587222 ~ 601007 (+)
ccdc51 ccdc51 coding upstream 383681 582798 ~ 585804 (+)
LOC103029902 NA coding upstream 391583 569183 ~ 577902 (+)
LOC103033844 cand2,LOC107691187,LOC107719941,LOC107557972,LOC107720354,LOC107657311 coding downstream 887 991934 ~ 1005603 (+)
LOC103042257 LOC108436685 coding downstream 22357 1013404 ~ 1026063 (+)
LOC103043017 NA coding downstream 37508 1028555 ~ 1038177 (+)
LOC103033530 LOC108436692 coding downstream 49075 1040122 ~ 1052816 (+)
LOC103033204 LOC108436691,LOC108255172,LOC107571036,LOC107557964,LOC793844 coding downstream 64604 1055651 ~ 1137686 (+)
G186436 NA non-coding upstream 64440 899941 ~ 905045 (+)
G186416 NA non-coding upstream 307257 661569 ~ 662228 (+)
G186410 NA non-coding upstream 341362 626712 ~ 628123 (+)
G186409 NA non-coding upstream 343108 615318 ~ 626377 (+)
G186402 NA non-coding upstream 407973 559399 ~ 561512 (+)
G186449 NA non-coding downstream 5715 996762 ~ 1076400 (+)
G186438 NA non-coding downstream 16776 1007823 ~ 1008883 (+)
G186458 NA non-coding downstream 96836 1087883 ~ 1094593 (+)
G186457 NA non-coding downstream 132499 1123546 ~ 1140605 (+)
G186641 NA non-coding downstream 398878 1389925 ~ 1390483 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 431269 510575 ~ 538216 (+)
G186231 NA other upstream 854398 107396 ~ 115087 (+)
G186880 lmcd1 other downstream 1989450 2980497 ~ 3002015 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other downstream 2401340 3392387 ~ 3394843 (+)
p3h1 NA other downstream 4788844 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 6086118 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 6201107 7192154 ~ 7192226 (+)

Expression


Co-expression Network