G186449


Basic Information

Item Value
gene id G186449
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 996762 ~ 1076400 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU252811
ggatgatcacaaaccatcaaaccaccaaactgaactgcttgaattaatttttgcaccagaagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggaagagaacatgatgccaagatgcatgaactaaaactgaatgaataaaaaccatcaggattattccaccaaatattgattatttctgaaatcttaaaactttatgaatatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU252811 True 220 lncRNA 0.34 3 996762 1076400

Neighbor

gene id symbol gene type direction distance location
slc6a6 slc6a6,slc6a6b,LOC107719944,LOC107567309,LOC107676359,LOC107562730 coding upstream 229305 728545 ~ 767457 (+)
lsm3 lsm3,LOC107676354,LOC107562728,LOC100705055 coding upstream 349507 643785 ~ 647255 (+)
mcm2 mcm2,LOC107718478 coding upstream 395755 587222 ~ 601007 (+)
ccdc51 ccdc51 coding upstream 410958 582798 ~ 585804 (+)
LOC103029902 NA coding upstream 418860 569183 ~ 577902 (+)
dock3 dock3 coding downstream 70052 1146452 ~ 1358373 (+)
manf manf,LOC107691893,LOC107567190,LOC107592842,LOC107677041,LOC107750980 coding downstream 286251 1362651 ~ 1368260 (+)
rbm15b rbm15b coding downstream 295319 1371719 ~ 1378558 (+)
dag1 dag1,LOC108415278,LOC107691879,LOC108415277 coding downstream 825238 1901638 ~ 1956628 (+)
nicn1 nicn1 coding downstream 969248 2045648 ~ 2055723 (+)
G186447 sec13,LOC107657312,LOC102785664 non-coding upstream 5715 969485 ~ 991047 (+)
G186440 NA non-coding upstream 20612 939375 ~ 976150 (+)
G186436 NA non-coding upstream 91717 899941 ~ 905045 (+)
G186416 NA non-coding upstream 334534 661569 ~ 662228 (+)
G186410 NA non-coding upstream 368639 626712 ~ 628123 (+)
G186458 NA non-coding downstream 11483 1087883 ~ 1094593 (+)
G186457 NA non-coding downstream 47146 1123546 ~ 1140605 (+)
G186641 NA non-coding downstream 313525 1389925 ~ 1390483 (+)
G186642 NA non-coding downstream 319013 1395413 ~ 1396643 (+)
G186637 pcbp4,LOC108436686 non-coding downstream 332723 1409123 ~ 1412311 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 458546 510575 ~ 538216 (+)
G186231 NA other upstream 881675 107396 ~ 115087 (+)
G186880 lmcd1 other downstream 1904097 2980497 ~ 3002015 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other downstream 2315987 3392387 ~ 3394843 (+)
p3h1 NA other downstream 4703491 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 6000765 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 6115754 7192154 ~ 7192226 (+)

Expression


Co-expression Network