G71895


Basic Information

Item Value
gene id G71895
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4424991 ~ 4426630 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU81956
TGGGGATCCATTTGCAGCTTTATTTAGAAAAAACAACAAGGCAGACAGGGGCAAAGGCAAGGACATAAACAGGGACAGGCAATGGTCGAGGCAGGCGGCAGACAAACAGTATCGGGTCACAGGCGGAGATCAGGGCAGGCGGCAAGCAAACACAGTCCAGTACACAGGCAAAGATCAGGGCAGGCAGCAGAGAATCACAACGAATAAACAGTCCAACGGTAACAGAATAAACAGTCCACAAGAAAACGCTCAGAAATGATCACCGGGGCAAATCAGGACTTCGCAGTGAGTGAGTGAGTGTGTGTGTGTGTGTGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGTGTGTGTGTGTGTGTGAGTGAGTGAGTGAGTGAGTGAGTGTGAGTGTGTGTGTGTGTGTGTGTCTTAAATAGTGTGGGTGTGATGAGGTGCAGGTGTGTGCGTGATCAGTCCCAGGAATGAGGGCCTGTGGGAAACGTAGTCCGAATGGGAACAGTCAATATTCGGGTGATGGCTCCCTCCGGTGGTGCGGAGGAGGAGGCGAGGGAGCCACATTCGTGACAGACACACTTTCATTACGAAATAATAAACATATCAATCTATTAAGAAGCTGATGAAAAACAATATTTCCCCACCACTGAAACAGTAGGGTCTAAAGAAGGTAAAATAGAGGGATCGGGGATATGTTGAAACAGTCTATTAACTCCAGATGGTATGGCATCAAAGACTATAGTATTCTTTAGGGGTAATGGGAATGTTGAAAGGACTGAGAAATTCCTCATAGTTTAATAAATGGCCATTTACAATAAACAATTGACTTACAAGCAAAATATCTGCCTCAAACCTGAAAGAAAAGAGATTTGTTTTTGATTCAATTTATTTATTTATTTATTTAATAGGGTCAATAAATGCAATTAAATTATGAACATTAGTATAAAATACAAAAGTTTAACAAGCCGGATTATAGCAACATTGCTAATTTACATCCGTAGTCCCTAGGCAGGTACACAAGGACACATACTCAAATATACATAAAGCATTAATAGCCAAATACTCCACACATTATTTAAAATAACCAAGTAAAATGTTTACACTTCTGGTTCGACATAAGCAACTTTTTAAGGTGATCTTTGTAGGTGTAATATGTAGAATAGTGTCTTAATGACCTGGGTAAGCTATTTCAATAAATACTCCCCATTACAGACAATACTTTTTGTCCAAAAGTCGTTTGTCTATATAGCACCCAGCAACACGCTCTAATGAAGACCTAGTACCAATGCCACAATCCATCTTCTTTTTTCTTTTTTTTAATAAATTAATTTAACAAAGGTGGGGCAAGCCCTTGCCATGAACCTATGAAATTTAGATAATTTAGCTGGTATTTTTTCAACATTATAATTGCAAAGCTGCACTGACTTTGTCAGTGTTTGTGATCAGAAGCTCAATGGACATTCCTTATCTCCTCATCCTCTTCAACAAACCAACAGCTCCTCCTAACAGACCCCCCGCAGTGCCTCCCACTGATGCCACACCAGCTGTTGCAGCTGCAGACATA
>TU81957
TGGGGATCCATTTGCAGCTTTATTTAGAAAAAACAACAAGGCAGACAGGGGCAAAGGCAAGGACATAAACAGGGACAGGCAATGGTCGAGGCAGGCGGCAGACAAACAGTATCGGGTCACAGGCGGAGATCAGGGCAGGCGGCAAGCAAACACAGTCCAGTACACAGGCAAAGATCAGGGCAGGCAGCAGAGAATCACAACGAATAAACAGTCCAACGGTAACAGAATAAACAGTCCACAAGAAAACGCTCAGAAATGATCACCGGGGCAAATCAGGACTTCGCAGTGAGTGAGTGAGTGTGAGTGTGAGTGTGTGTGTGTGTGTGTGTCTTAAATAGTGTGGGTGTGATGAGGTGCAGGTGTGTGCGTGATCAGTCCCAGGAATGAGGGCCTGTGGGAAACGTAGTCCGAATGGGAACAGTCAATATTCGGGTGATGGCTCCCTCCGGTGGTGCGGAGGAGGAGGCGAGGGAGCCACATTCGTGACAGACACACTTTCATTACGAAATAATAAACATATCAATCTATTAAGAAGCTGATGAAAAACAATATTTCCCCACCACTGAAACAGTAGGGTCTAAAGAAGGTAAAATAGAGGGATCGGGGATATGTTGAAACAGTCTATTAACTCCAGATGGTATGGCATCAAAGACTATAGTATTCTTTAGGGGTAATGGGAATGTTGAAAGGACTGAGAAATTCCTCATAGTTTAATAAATGGCCATTTACAATAAACAATTGACTTACAAGCAAAATATCTGCCTCAAACCTGAAAGAAAAGAGATTTGTTTTTGATTCAATTTATTTATTTATTTATTTAATAGGGTCAATAAATGCAATTAAATTATGAACATTAGTATAAAATACAAAAGTTTAACAAGCCGGATTATAGCAACATTGCTAATTTACATCCGTAGTCCCTAGGCAGGTACACAAGGACACATACTCAAATATACATAAAGCATTAATAGCCAAATACTCCACACATTATTTAAAATAACCAAGTAAAATGTTTACACTTCTGGTTCGACATAAGCAACTTTTTAAGGTGATCTTTGTAGGTGTAATATGTAGAATAGTGTCTTAATGACCTGGGTAAGCTATTTCAATAAATACTCCCCATTACAGACAATACTTTTTGTCCAAAAGTCGTTTGTCTATATAGCACCCAGCAACACGCTCTAATGAAGACCTAGTACCAATGCCACAATCCATCTTCTTTTTTCTTTTTTTTAATAAATTAATTTAACAAAGGTGGGGCAAGCCCTTGCCATGAACCTATGAAATTTAGATAATTTAGCTGGTATTTTTTCAACATTATAATTGCAAAGCTGCACTGACTTTGTCAGTGTTTGTGATCAGAAGCTCAATGGACATTCCTTATCTCCTCATCCTCTTCAACAAACCAACAGCTCCTCCTAACAGACCCCCCGCAGTGCCTCCCACTGATGCCACACCAGCTGTTGCAGCTGCAGACATA
>TU81958
TGGGGATCCATTTGCAGCTTTATTTAGAAAAAACAACAAGGCAGACAGGGGCAAAGGCAAGGACATAAACAGGGACAGGCAATGGTCGAGGCAGGCGGCAGACAAACAGTATCGGGTCACAGGCGGAGATCAGGGCAGGCGGCAAGCAAACACAGTCCAGTACACAGGCAAAGATCAGGGCAGGCAGCAGAGAATCACAACGAATAAACAGTCCAACGGTAACAGAATAAACAGTCCACAAGAAAACGCTCAGAAATGATCACCGGGGCAAATCAGGACTTCGCAGTGAGTGAGTGAGTGTGTGTGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGTGTGTGTGTGTGTGTGAGTGAGTGAGTGAGTGAGTGAGTGTGAGTGTGTGTGTGTGTGTGTGTCTTAAATAGTGTGGGTGTGATGAGGTGCAGGTGTGTGCGTGATCAGTCCCAGGAATGAGGGCCTGTGGGAAACGTAGTCCGAATGGGAACAGTCAATATTCGGGTGATGGCTCCCTCCGGTGGTGCGGAGGAGGAGGCGAGGGAGCCACATTCGTGACAGACACACTTTCATTACGAAATAATAAACATATCAATCTATTAAGAAGCTGATGAAAAACAATATTTCCCCACCACTGAAACAGTAGGGTCTAAAGAAGGTAAAATAGAGGGATCGGGGATATGTTGAAACAGTCTATTAACTCCAGATGGTATGGCATCAAAGACTATAGTATTCTTTAGGGGTAATGGGAATGTTGAAAGGACTGAGAAATTCCTCATAGTTTAATAAATGGCCATTTACAATAAACAATTGACTTACAAGCAAAATATCTGCCTCAAACCTGAAAGAAAAGAGATTTGTTTTTGATTCAATTTATTTATTTATTTATTTAATAGGGTCAATAAATGCAATTAAATTATGAACATTAGTATAAAATACAAAAGTTTAACAAGCCGGATTATAGCAACATTGCTAATTTACATCCGTAGTCCCTAGGCAGGTACACAAGGACACATACTCAAATATACATAAAGCATTAATAGCCAAATACTCCACACATTATTTAAAATAACCAAGTAAAATGTTTACACTTCTGGTTCGACATAAGCAACTTTTTAAGGTGATCTTTGTAGGTGTAATATGTAGAATAGTGTCTTAATGACCTGGGTAAGCTATTTCAATAAATACTCCCCATTACAGACAATACTTTTTGTCCAAAAGTCGTTTGTCTATATAGCACCCAGCAACACGCTCTAATGAAGACCTAGTACCAATGCCACAATCCATCTTCTTTTTTCTTTTTTTTAATAAATTAATTTAACAAAGGTGGGGCAAGCCCTTGCCATGAACCTATGAAATTTAGATAATTTAGCTGGTATTTTTTCAACATTATAATTGCAAAGCTGCACTGACTTTGTCAGTGTTTGTGATCAGAAGCTCAATGGACATTCCTTATCTCCTCATCCTCTTCAACAAACCAACAGCTCCTCCTAACAGACCCCCCGCAGTGCCTCCCACTGATGCCACACCAGCTGTTGCAGCTGCAGACATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81956 False 1570 lncRNA 0.41 2 4424991 4426630
TU81957 False 1480 lncRNA 0.41 2 4424991 4426630
TU81958 True 1562 lncRNA 0.41 2 4424991 4426630

Neighbor

gene id symbol gene type direction distance location
CI01000012_04404769_04419096 PHF3 coding downstream 5895 4404326 ~ 4419096 (-)
CI01000012_04375448_04378813 NA coding downstream 45587 4375358 ~ 4379404 (-)
CI01000012_04048205_04049218 NA coding downstream 375485 4046153 ~ 4049506 (-)
CI01000012_03963989_03965578 NA coding downstream 459251 3963173 ~ 3965740 (-)
CI01000012_03875714_03882574 NA coding downstream 542417 3875082 ~ 3882574 (-)
CI01000012_04706769_04709074 GPHB5 coding upstream 280071 4706701 ~ 4709074 (-)
CI01000012_04839741_04854323 NA coding upstream 412845 4839475 ~ 4854999 (-)
CI01000012_04879477_04890031 FRMD6 coding upstream 452810 4879440 ~ 4890031 (-)
CI01000012_04926292_04930302 TMX1 coding upstream 498866 4925496 ~ 4930474 (-)
CI01000012_05022143_05030697 ATL1 coding upstream 595113 5021743 ~ 5030697 (-)
G71847 NA non-coding downstream 232806 4167511 ~ 4192185 (-)
G71834 NA non-coding downstream 298445 4126271 ~ 4126546 (-)
G71831 NA non-coding downstream 314608 4109910 ~ 4110383 (-)
G71825 NA non-coding downstream 332910 4091875 ~ 4092081 (-)
G71814 NA non-coding downstream 372759 4051954 ~ 4052232 (-)
G71887 NA non-coding upstream 6278 4432908 ~ 4487952 (-)
G71890 NA non-coding upstream 15127 4441757 ~ 4490039 (-)
G71957 NA non-coding upstream 41810 4468440 ~ 4477940 (-)
G71892 NA non-coding upstream 68571 4495201 ~ 4497795 (-)
G71971 NA non-coding upstream 79960 4506590 ~ 4507270 (-)
G70774 NA other downstream 1558099 2866508 ~ 2866892 (-)
G69562 NA other downstream 3048693 1332075 ~ 1376298 (-)
CI01000012_01139864_01192154 TTC7A other downstream 3273793 1135676 ~ 1192154 (-)
G69332 NA other downstream 3649112 775364 ~ 775879 (-)
G69277 NA other downstream 3694526 729920 ~ 730465 (-)
G71898 NA other upstream 106900 4533530 ~ 4534672 (-)
G72068 NA other upstream 349590 4776220 ~ 4780132 (-)
G72204 NA other upstream 867143 5293773 ~ 5302206 (-)
CI01000012_05414096_05416676 TTC9 other upstream 937012 5413369 ~ 5416780 (-)
G72294 NA other upstream 1036210 5462840 ~ 5465857 (-)

Expression


Co-expression Network