G71890


Basic Information

Item Value
gene id G71890
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4441757 ~ 4490039 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU81942
TGACAGAGAGATTTTTATTTTTTATTTTATTTGCATATAAACAGCCCCCTTACACCTAAACTTAGCTACAGATACAGATATGCCATTGTGATGTTGATCACTTATACATACAGTGAGATAGTAATAATATAATGATTTTTTTTAGAAACATATATAAATGCACAAATTTAAAGTAGTTACACAGTACAGTTGCTAGCCATGCTGGCAGCGGCCCCCAGAGCGGCTCCCAGAGTGCCCACGATGGCTTGACCTGCCAAAGGGATTCCAGCAGCACCTGCGGCTCCCAGAGTGCCCACGATGGCTTGACCTGACAAAGGGATTCCAGCAGCACCTAATGTCGTGAAATATGTCAGTTGAAAGAGTTTGTGTAGCCTATTTGCACCTTGCATTAATATTACATTGTTAAACTGGTTAAGAGTTTTTTTTAAATTCCAGATATTTGGTTCACCAACAGCGACTTGAAGAGTTGCGACCACACATCCAGCCTCTAGAATAGCAGGAG
>TU81944
TGACAGAGAGATTTTTATTTTTTATTTTATTTGCATATAAACAGCCCCCTTACACCTAAACTTAGCTACAGATACAGATATGCCATTGTGATGTTGATCACTTATACATACAGTGAGATAGTAATAATATAATGATTTTTTTTAGAAACATATATAAATGCACAAATTTAAAGTAGTTACACAGTACAGTTGCTAGCCATGCTGGCAGCGGCCCCCAGAGCGGCTCCCAGAGTGCCCACGATGGCTTGACCTGCCAAAGGGATTCCAGCGGCCCCCAGAGCGGCTCCCAGAGTGCCCACGATGGCTTGACCTGACAAAGGGATTCCAGCAGCACCTAATGTCGTGAAATATGTCAGTTGAAAGAGTTTGTGTAGCCTATTTGCACCTTGCATTAATATTACATTGTTAAACTGGTTAAGAGTTTTTTTTAAATTCCAGATATTTGGTTCACCAACAGCGACTTGAAGAGTTGCGACCACACATCCAGCCTCTAGAATAGCAGGAG
>TU81943
TGACAGAGAGATTTTTATTTTTTATTTTATTTGCATATAAACAGCCCCCTTACACCTAAACTTAGCTACAGATACAGATATGCCATTGTGATGTTGATCACTTATACATACAGTGAGATAGTAATAATATAATGATTTTTTTTAGAAACATATATAAATGCACAAATTTAAAGTAGTTACACAGTACAGTTGCTAGCCATGCTGGCAGCGGCCCCCAGAGCGGCTCCCAGAGTGCCCACGATGGCTTGACCTGCCAAAGGGATTCCAGCAGCACCTAATGACATGAAATATGTCAGTTGAAAGAGTTTGTGTAGCCTATATGCCACTTGAATAAATCAGATTTATTGTTAAACTGGTTATTCCATATATTTGGCTCACCGGCGGCTTGAAGAGTTGCTACCAAGCCTCCAGCTGCGACCCCTCCTCCGTTAGCCACGGCGGCAGCTGACATCATAGTGGAGGCAATTGAACCTGCAGCAATTCCACCTGCGGTGAAACCGGCCGCTGCTAGAACAGCAGGAGCTGCAACAACTGCTCCGGCTATTGGTGGAAATTATAAATTCCATTAACATAATTTATATATGCACTAAAACATTTTGGTATGTTTAAAATTAACTAACATTGAGCAATACATTGCTACAGTAGCTATTTATTAATCTTTGTTAACGTTAGTCATTGTTAATTCATGTTAGCGTAGGCCCATTAAATAATATTAATACAACTTTTGATTTTATATCTATATTATCTATACAACAGATAGAAAATATAGACATGGTTTCACAAACAGGGCTTAGATTAAGCCAGGAGGACATTACTGGTGTGTGCATCTTGAGACAAAACAATGGCACTAGCCATACTTTAAGATATGTTTAACAGCTCAGACATGTATTTTAGTCTGGAATAGGCTCAAACCTTGTCTGTGAAACCAGGCTATATATAATTTTTTTTACATTTTATATCTTATATTTACATGTTTACCTGCTGCTGCACCGGTTGCAATAAGCGTAACTGGAGGATAGATGGAAAAACAAGTACACTGTCAGTTGTTGATAAACATTTAAAATTTTACAGTTATATTAAAAGATACTTACAGGGATCCATTTTAAGTCGACTCTATTAAAGCGAACAAACTCAGGATGCTCTTGCTTTACACCGATCTCTTATATGTGGGTGTGAGCTTTTATAGCTTCTTTTCAAAGGAATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATGAAAAAATTATGTAACCAAAATAACACGTTTTAAAAACGTTGTGGAAATACCAAAATGGTATGTTTTCTTTAAGTAGTCAAAAAAACGTTAATATCACGTTTGTCTACTACGAAAACGAAACTATACCAAATTGCAACTTTTGGGAGATGTTTTATTCAGGTGTTAAAATAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU81942 False 502 lncRNA 0.41 2 4441757 4490039
TU81944 False 505 lncRNA 0.42 2 4441757 4490039
TU81943 True 1419 lncRNA 0.35 2 4482609 4490039

Neighbor

gene id symbol gene type direction distance location
CI01000012_04404769_04419096 PHF3 coding downstream 22661 4404326 ~ 4419096 (-)
CI01000012_04375448_04378813 NA coding downstream 62353 4375358 ~ 4379404 (-)
CI01000012_04048205_04049218 NA coding downstream 392251 4046153 ~ 4049506 (-)
CI01000012_03963989_03965578 NA coding downstream 476017 3963173 ~ 3965740 (-)
CI01000012_03875714_03882574 NA coding downstream 559183 3875082 ~ 3882574 (-)
CI01000012_04706769_04709074 GPHB5 coding upstream 216662 4706701 ~ 4709074 (-)
CI01000012_04839741_04854323 NA coding upstream 349436 4839475 ~ 4854999 (-)
CI01000012_04879477_04890031 FRMD6 coding upstream 389401 4879440 ~ 4890031 (-)
CI01000012_04926292_04930302 TMX1 coding upstream 435457 4925496 ~ 4930474 (-)
CI01000012_05022143_05030697 ATL1 coding upstream 531704 5021743 ~ 5030697 (-)
G71895 NA non-coding downstream 15127 4424991 ~ 4426630 (-)
G71847 NA non-coding downstream 249572 4167511 ~ 4192185 (-)
G71834 NA non-coding downstream 315211 4126271 ~ 4126546 (-)
G71831 NA non-coding downstream 331374 4109910 ~ 4110383 (-)
G71825 NA non-coding downstream 349676 4091875 ~ 4092081 (-)
G71892 NA non-coding upstream 5162 4495201 ~ 4497795 (-)
G71971 NA non-coding upstream 16551 4506590 ~ 4507270 (-)
G71977 NA non-coding upstream 31929 4521968 ~ 4522241 (-)
G71979 NA non-coding upstream 38385 4528424 ~ 4584413 (-)
G71906 NA non-coding upstream 39318 4529357 ~ 4585174 (-)
G70774 NA other downstream 1574865 2866508 ~ 2866892 (-)
G69562 NA other downstream 3065459 1332075 ~ 1376298 (-)
CI01000012_01139864_01192154 TTC7A other downstream 3290559 1135676 ~ 1192154 (-)
G69332 NA other downstream 3665878 775364 ~ 775879 (-)
G69277 NA other downstream 3711292 729920 ~ 730465 (-)
G71898 NA other upstream 43491 4533530 ~ 4534672 (-)
G72068 NA other upstream 286181 4776220 ~ 4780132 (-)
G72204 NA other upstream 803734 5293773 ~ 5302206 (-)
CI01000012_05414096_05416676 TTC9 other upstream 873603 5413369 ~ 5416780 (-)
G72294 NA other upstream 972801 5462840 ~ 5465857 (-)

Expression


Co-expression Network