G187340


Basic Information

Item Value
gene id G187340
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 4574032 ~ 4576639 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU254031
ttgactACAGTGCaaaactgttttagttttatttaacaatCACAGTCCACATCTGCAggcattagtattagtatacAGAGCAAACAGTCTTTTCAATATAAATAGTAtttaacctcctgagacctgGACATTTGCTTGTTGTGCATTCTAGCTCATTGGGATTATTAGGATCTAAcgagtataaaaaaacaatgcaaaaaataatgtcCTCATATTTTGATCgtagtttaattaataaacatttaagaataattttagctttctacagtaagtcATTAAACTAGTTTAATGTTTCTGTCtcaactggctgtagaaacattTGTCTGGGATGGATTCATGTGACCTTTAGATGGTACAGACAGTCTCTCCTTAACAGATCAAAGGGTCAACGTTTCAAAAAACAATTATGTAACATGGTGAAAAAATGGTGGAGaaacagaaatgtaatgtccccatTTGAGgatgcagggtctcaagaggttaaGTGGCCCACATGATGAGATAAAagattattattctttttttttagcaacTGTGTTGTTAAGTTTGCTGGACCAATCTCATTTTTTATTGAAgaaccaaaagttttttttgccactttatTTAGTACCTTTCTCAAACCTAAGGATGCTCCACATTAAAGACAACCAATCAGCAAGAAACCAAAAGTATCAGTTCTCCAGCAGACAGGGTGGAAAAACACCTCAGAGTAAAGTGTAAAATCACTTAGCTGGCACATGCAGAGTCTAAATGAGCAGCTAAAAATCCCATTCAGCCTGAAAGACGTCAAAGCCGCGAAGTACAGTGATTTAAATTTAGATCATAAACAAATTGTCATGAAAATGTGACAAAATCATGTAAATCAGGATTGATATATGATATTTTGTTGTGAGTTACTGATCGGTAATATATCAGTGTGATTACTTTCCTCTGAAAGTGAAATGatacacaataaattaaaacatttattaataaacttcaTGTAAAACTGTAACACAGTGATTggtgtcaaaataaaaacaaaagttgcAGTGTAGGCTCCTGAAAACAGCGGCGATTCTTCATCTTGTACAGACGTCATCGTTGCACTAcgagagaaacaaaaaac

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU254031 True 1108 lncRNA 0.34 2 4574032 4576639

Neighbor

gene id symbol gene type direction distance location
slc45a1 slc45a1,LOC107654425 coding downstream 14233 4538302 ~ 4559799 (-)
errfi1 LOC108413607 coding downstream 189794 4374402 ~ 4384238 (-)
LOC103030039 pax7,pax7a,LOC108255053,LOC107701983 coding downstream 270577 4228840 ~ 4303455 (-)
park7 park7,LOC107657982,LOC107701995 coding downstream 402205 4162390 ~ 4171827 (-)
LOC107196799 LOC108431625,LOC107706545 coding downstream 657256 3908371 ~ 3916776 (-)
mmel1 mmel1,LOC107756657,LOC107654428,LOC107702001,LOC107712974,LOC107592889 coding upstream 7621 4584260 ~ 4611730 (-)
LOC103025299 NA coding upstream 234044 4810683 ~ 4824075 (-)
LOC103024243 NA coding upstream 266593 4843232 ~ 4857309 (-)
LOC103024768 LOC108441423 coding upstream 323376 4900015 ~ 4934604 (-)
per3 per3,LOC108441424,LOC107654358,LOC107592896 coding upstream 369933 4946572 ~ 4972846 (-)
G187339 fam213b,LOC107702003,LOC107582414,LOC107712975 non-coding downstream 8183 4560308 ~ 4565849 (-)
G187335 LOC103028044 non-coding downstream 36097 4492577 ~ 4537935 (-)
G187344 NA non-coding downstream 58508 4514930 ~ 4515524 (-)
G187331 NA non-coding downstream 87050 4486777 ~ 4486982 (-)
G187330 tas1r3 non-coding downstream 90199 4483514 ~ 4483833 (-)
G187353 NA non-coding upstream 51287 4627926 ~ 4632465 (-)
G187365 NA non-coding upstream 138976 4715615 ~ 4718668 (-)
G187375 NA non-coding upstream 224469 4801108 ~ 4801901 (-)
G187431 NA non-coding upstream 292286 4868925 ~ 4869788 (-)
G187432 NA non-coding upstream 293252 4869891 ~ 4870820 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other downstream 413078 3970934 ~ 4160954 (-)
LOC107197677 NA other downstream 794312 3778014 ~ 3779720 (-)
G187154 NA other downstream 799189 3765863 ~ 3774843 (-)
G187156 NA other downstream 818355 3749815 ~ 3755677 (-)
G186673 NA other downstream 3183545 1389924 ~ 1390487 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other upstream 397589 4974228 ~ 4989258 (-)
phf13 phf13 other upstream 916773 5493412 ~ 5505747 (-)
svbp svbp other upstream 942154 5518793 ~ 5522921 (-)
LOC111195363 snrpe other upstream 2401012 6977651 ~ 6982840 (-)
pdrg1 pdrg1 other upstream 2611977 7188616 ~ 7193252 (-)

Expression


Co-expression Network