G187431


Basic Information

Item Value
gene id G187431
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 4868925 ~ 4869788 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU254160
ACCGGTGTAAATTCAGATTTATGGCACTTTTCTTATACatgaacatacagtatatttacataTCGATGAGCTGATTAAtcactgaaatatatataaaaatatgcagaaaatcaTACATAGGCAATGGATGGCATACTGTTTAACAGAGAAAATGTCGTCAGAAACAGCAAAGACAGCTACACCTGAACTGCCATACAGTACCATACAGTTTCATAACAGGGGTCAGATTGTATAATACTGAAAACAATAGAGAGGTGATAAAGttacacagcttaaaaaaaGTTTAACATGGATACAGTGTCAGATTGCTCTGTGTAGTAGATACAATTATTCCATTATGTgaaatatatacacagtaatTGTGGATCGCACAATTActgtgtatattattttttgggATGCACAGCTTCTTCTGCACTAGATAAGCATCAAGCATCTTTTGCATCAAGCCAGTAAATATTATGAAGCACAAGCTCCATGCAGTATGTCTTTAAATGTCAGCAGACCAGTCAGCTTGAGTCTCTATTGGTGGTCCCGAGCACAGGATCCCCCCGTGCCTATAAGCATTAGAGAGTATGTGTATAAAGTGTCCAGTTGGACTAATGGAAAGCAGATTATCCAGCGTAAGTACAGTTTAGTCTCTGTCCCAGTTTAAGCTTTCACACTCTTCTTCAGGTGCATGTACAGCACCCCGCTGCAGAGGAGCAGCGGCACACACACCCAGGCCAGGATGAAGCAGTAGCCGAACCGGCCCTTGCTCGGGTCCCGGATGTCCTGTAGGATCTCCTGCCGCTGGAAGGTGTAGATGAGGACAGCAGCGAACGCTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254160 True 829 lncRNA 0.42 2 4868925 4869788

Neighbor

gene id symbol gene type direction distance location
LOC103024243 NA coding downstream 11616 4843232 ~ 4857309 (-)
LOC103025299 NA coding downstream 44850 4810683 ~ 4824075 (-)
mmel1 mmel1,LOC107756657,LOC107654428,LOC107702001,LOC107712974,LOC107592889 coding downstream 257195 4584260 ~ 4611730 (-)
slc45a1 slc45a1,LOC107654425 coding downstream 309126 4538302 ~ 4559799 (-)
errfi1 LOC108413607 coding downstream 484687 4374402 ~ 4384238 (-)
LOC103024768 LOC108441423 coding upstream 30227 4900015 ~ 4934604 (-)
per3 per3,LOC108441424,LOC107654358,LOC107592896 coding upstream 76784 4946572 ~ 4972846 (-)
LOC103022065 NA coding upstream 125209 4994997 ~ 5466875 (-)
LOC103046070 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC103465423,LOC100691174,LOC101164400,LOC108248645 coding upstream 877102 5746890 ~ 5763512 (-)
c22h1orf50 cunh1orf50,zgc:112255,LOC107654415,LOC107654365,LOC107565729,LOC107582467,LOC107756638,LOC107751182 coding upstream 902022 5771810 ~ 5776145 (-)
G187375 NA non-coding downstream 67024 4801108 ~ 4801901 (-)
G187365 NA non-coding downstream 150257 4715615 ~ 4718668 (-)
G187353 NA non-coding downstream 236460 4627926 ~ 4632465 (-)
G187340 NA non-coding downstream 292286 4574032 ~ 4576639 (-)
G187339 fam213b,LOC107702003,LOC107582414,LOC107712975 non-coding downstream 303076 4560308 ~ 4565849 (-)
G187432 NA non-coding upstream 103 4869891 ~ 4870820 (-)
G187545 NA non-coding upstream 621593 5491381 ~ 5492666 (-)
LOC111195361 NA non-coding upstream 631207 5500995 ~ 5501769 (-)
G187548 NA non-coding upstream 638497 5508285 ~ 5509731 (-)
G187555 NA non-coding upstream 831084 5700872 ~ 5706342 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other downstream 707971 3970934 ~ 4160954 (-)
LOC107197677 NA other downstream 1089205 3778014 ~ 3779720 (-)
G187154 NA other downstream 1094082 3765863 ~ 3774843 (-)
G187156 NA other downstream 1113248 3749815 ~ 3755677 (-)
G186673 NA other downstream 3478438 1389924 ~ 1390487 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other upstream 104440 4974228 ~ 4989258 (-)
phf13 phf13 other upstream 623624 5493412 ~ 5505747 (-)
svbp svbp other upstream 649005 5518793 ~ 5522921 (-)
LOC111195363 snrpe other upstream 2107863 6977651 ~ 6982840 (-)
pdrg1 pdrg1 other upstream 2318828 7188616 ~ 7193252 (-)

Expression


Co-expression Network