G187471


Basic Information

Item Value
gene id G187471
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 5490085 ~ 5491257 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU254202
atgccactgtatatTGTGTGCAGCCCTATTTGTTTTAcagatatatatgtgtgttgaATCTTATGCTGCTCGTCATCAATTATCTATAAgttttccatgttttctttGTCTGTTGTTAGTTTTAggctgtttgtttttattatgttaGTTTGAGCCAGTATTATTTTCCCCTCGACTGAACAGTGTCGTGTCTGCTGCTGTTCTTTTAATCCGAATCGCGTTCCGCTTTGGAAGTGAGACTTTATCACAGCATTGCACGAATGGAGCTCGAGTGAAGGAACCGAATGATTGGGAATAGTTTGTTTTGTTGGTTCGAATAGCGTTTACCGACACAGTGAATGAACACGGAACCGAGCACACCAGAGAGTTAGTTAAAGGAAGTCAATTCTAACAGATTAATttagttataatatatatatatttcatatccAAATGTGACTTGCATATGTATAGTGTTATGTTAATGTGCCATTACTCCATTCCTCCATTCATCTGTTCTTTTAGCAGTTTGCACCATCATCTAAAGTTCATCATATTTGTAATTACGGtaccatgtttatttattttttaacatcagTCAGAATGGATATGTACTTATTACAGTTTCTGCTCACATAACCTATTGCGATAACTGTGAGGCTAAGCTGGGCTGACTGCTCGTGAGGACTGAGGACTGCAGTTCATGCTCTGCATTCTTGGTtgacgaagaaaaaaaaaaaagaaaaaaagagggatttttttttgtgctcctCTGGATGGGCATAAACAGGTATACAATTGTTCTCTTAAATGTTCCTTGTTAGCACTACCCAGGGACAGTTTTAGTGCAATAAAACTTGAAAAACTAGGCCACAGCACCCTTTTAGGCAACAGAATTGCTCATCTGTTACACCTATAAGGCTTTCAGGGCCTGGTACTGGACTAAAATAGCATTCCAATAGACAATTCCCTCACTGAGAACCGTGAAAGAGCTCCTATATATGTTAAAACCCAACCCAGAAGGTCCAGTTGAGTAATTCCTAGGGGCATTTTCACCCCTGAAAGTCTGGATCAGTGTCTGAATCATGGCtcatgtttgttacattgtatacatttacatttggaCCGTTTAGTTTTGGATTCACACTGCATTTTAGGttgtttggtaacactttctttgaatgtcatctctat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254202 True 1173 lncRNA 0.38 1 5490085 5491257

Neighbor

gene id symbol gene type direction distance location
LOC103021734 dnajc11,LOC107654442,LOC107751176,LOC103038967 coding upstream 3672 5472482 ~ 5486413 (+)
LOC103023081 LOC108441425 coding upstream 550020 4936994 ~ 4940065 (+)
tnfrsf9 NA coding upstream 595044 4887519 ~ 4895041 (+)
LOC103023712 NA coding upstream 605719 4873029 ~ 4884366 (+)
LOC103025087 NA coding upstream 620296 4859869 ~ 4869789 (+)
fbxo2 NA coding downstream 17051 5508308 ~ 5517565 (+)
wnt4 wnt4,wnt4a,LOC107565731,LOC107654388 coding downstream 234086 5725343 ~ 5731344 (+)
ap5b1 ap5b1 coding downstream 274192 5765449 ~ 5771297 (+)
cldn19 cldn19,LOC107654447,LOC107582397,LOC107751184,LOC107565733 coding downstream 326727 5817984 ~ 5835626 (+)
LOC111195362 NA coding downstream 655428 6146685 ~ 6147519 (+)
G187472 NA non-coding upstream 255 5488960 ~ 5489830 (+)
G187473 NA non-coding upstream 2274 5487088 ~ 5487811 (+)
LOC111195360 NA non-coding upstream 486073 4991541 ~ 5004012 (+)
G187409 NA non-coding upstream 500858 4978384 ~ 4989227 (+)
G187399 NA non-coding upstream 540435 4941025 ~ 4949650 (+)
G187475 NA non-coding downstream 3213 5494470 ~ 5495414 (+)
G187477 NA non-coding downstream 7847 5499104 ~ 5501876 (+)
G187484 NA non-coding downstream 149565 5640822 ~ 5641056 (+)
G187487 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC105931589 non-coding downstream 210536 5701793 ~ 5763491 (+)
G187493 NA non-coding downstream 268260 5759517 ~ 5843830 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 2095242 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 2488070 2980497 ~ 3002015 (+)
podxl2 NA other upstream 4394748 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 4951869 510575 ~ 538216 (+)
G186231 NA other upstream 5374998 107396 ~ 115087 (+)
p3h1 NA other downstream 288634 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 1585908 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 1700897 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 2620746 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 2765539 8256796 ~ 8271712 (+)

Expression


Co-expression Network