G187475


Basic Information

Item Value
gene id G187475
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 5494470 ~ 5495414 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU254207
tatcagatcagatttgttaAATTCTctcattttatgttaaaaactCAGTATGGAAACTAATATAGAAGGAACCTTCTGtccattttctgtatttattttatgcgCATCTGTGCCTGGTTCTTGAAAGCAGAGAAATACAAACGGAACAGAATAGTACCATTTAAAACGGAAGGGGCTTTGTAGCAAATAGTTCAAgctaaatatttacacaaatacaaaaatacagacCATTTTCTTTCGTATTCTGCATTCGTTTTGTCCGTATTTGTGCATATTTGTTATAAGCTTACAAATAAAAACCTTCTGACTGTATTTATACATGTTTCATGAAAGCCTAAATATaacaaaacagaacagattAGTGTTGCTTACAACGGTGGCGGCAGTGTAGCTAATTGTTTGAGCAAAACATAACTACAAATGCCGATACGGACACAACCTTCTGTCCGTACTCTGCCATTTATGTTGTCCGTATTTGGGCATGTTACAGTAAAGCTGAGaaatacaaacagaacaaaatggTACCATTTAAAACTGTGGGGGCATTGTTCAAGCAAAACATGAGCAAGGGTACGGATGTGGACACAAGCATCTGTCTGTACTCTGCATAAAATGCTGTCCGTATTTGTGCACATTACTTTAAAGCTGTGAAATATAAAGGGAACAGAATGGTAGCACTTAAAACTGTGGGGGCCGTATAGCTAACAGTTTAAGCTAAACCTGGCTAAGGGTACAGATATAGACATAGACACGCAACCTTCTGTCCGTACTCAGTAATTTTTTCCGTATTTATACACGTTTTATGAAAGATTAAAAATACAGAGtacaaaatggtaaaaaaaaaaaaaagggaggcaGTGTAGCTAATAAGTCAACTACATAACTACAAATGCAGGTACGAACACAACCTTCAGTCCGTACTCTGCATAcattttgtctgtattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254207 True 945 lncRNA 0.36 1 5494470 5495414

Neighbor

gene id symbol gene type direction distance location
LOC103021734 dnajc11,LOC107654442,LOC107751176,LOC103038967 coding upstream 8057 5472482 ~ 5486413 (+)
LOC103023081 LOC108441425 coding upstream 554405 4936994 ~ 4940065 (+)
tnfrsf9 NA coding upstream 599429 4887519 ~ 4895041 (+)
LOC103023712 NA coding upstream 610104 4873029 ~ 4884366 (+)
LOC103025087 NA coding upstream 624681 4859869 ~ 4869789 (+)
fbxo2 NA coding downstream 12894 5508308 ~ 5517565 (+)
wnt4 wnt4,wnt4a,LOC107565731,LOC107654388 coding downstream 229929 5725343 ~ 5731344 (+)
ap5b1 ap5b1 coding downstream 270035 5765449 ~ 5771297 (+)
cldn19 cldn19,LOC107654447,LOC107582397,LOC107751184,LOC107565733 coding downstream 322570 5817984 ~ 5835626 (+)
LOC111195362 NA coding downstream 651271 6146685 ~ 6147519 (+)
G187471 NA non-coding upstream 3213 5490085 ~ 5491257 (+)
G187472 NA non-coding upstream 4640 5488960 ~ 5489830 (+)
G187473 NA non-coding upstream 6659 5487088 ~ 5487811 (+)
LOC111195360 NA non-coding upstream 490458 4991541 ~ 5004012 (+)
G187409 NA non-coding upstream 505243 4978384 ~ 4989227 (+)
G187477 NA non-coding downstream 3690 5499104 ~ 5501876 (+)
G187484 NA non-coding downstream 145408 5640822 ~ 5641056 (+)
G187487 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC105931589 non-coding downstream 206379 5701793 ~ 5763491 (+)
G187493 NA non-coding downstream 264103 5759517 ~ 5843830 (+)
G187583 NA non-coding downstream 390388 5885802 ~ 5886002 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 2099627 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 2492455 2980497 ~ 3002015 (+)
podxl2 NA other upstream 4399133 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 4956254 510575 ~ 538216 (+)
G186231 NA other upstream 5379383 107396 ~ 115087 (+)
p3h1 NA other downstream 284477 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 1581751 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 1696740 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 2616589 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 2761382 8256796 ~ 8271712 (+)

Expression


Co-expression Network