G187477


Basic Information

Item Value
gene id G187477
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 5499104 ~ 5501876 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU254209
CGTCTGCAGATCCGTCTTCGTCGCGGAATACGACCTGCTTTCCTTGCCGAATCACTGTCCTTGTGCCGGGCAATCCCTCCAATTTCATCACTACTGCCTCGCCCTCAGGCAGCATCAACCTCTCCCGGCTCTCACTGCTGGAATCTGGACCCGAGCTGGCAGGAGAACGGCAGCAGGGCCGCTCCATCTCTGGCTCCTCTTTACAGGCTACGGTACCCTGCAAGCTCGGCATAGGACTTACAGCAGAGTGAGATGTGCGAGTCATGTCCATGTATGAAGACGTGGGCGTGGGGATGCTTAAAAAATCCTCAGGCTCCTCCTTAATAGCCCGGCTGAAGGGAGAGATTTCCGCCACAGGACTGGATGGAAATGACGTGAAAGAGGAGTCAGACGTGTCGCCTTTACTCTTCTctggcttctttttcttcttcttgacCTTGTCGGGTTTCTTGCGTCCCTCGAGGAGAAGGCCTGTGGATTTGGGGCGCTTCTGAAACTCAGGTTCCTCTGCTGACGGCCTTTTGAACCCAGCGAAGCTCTTTCTGCTTTTGGGTGAAGGCTCATCTGGTGAAGGAAGACCGCAGCCCAGGCGTGAGCTGTCCCAGCAATCACTGTCCGCAGTGCTGCCTGTGCTGTTGGGGGGGCTGGAGCTGCTCCTCAGGGGGGTCTCCTCCTGTGGATATGGGATGTAACCAGCATATGCCAGCACAAATGTGCAAAACTTGTTAAAATCTTCTATCGTCCTTTTCCTTTTGTATGTTGGACTATAACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254209 True 773 lncRNA 0.54 2 5499104 5501876

Neighbor

gene id symbol gene type direction distance location
LOC103021734 dnajc11,LOC107654442,LOC107751176,LOC103038967 coding upstream 12691 5472482 ~ 5486413 (+)
LOC103023081 LOC108441425 coding upstream 559039 4936994 ~ 4940065 (+)
tnfrsf9 NA coding upstream 604063 4887519 ~ 4895041 (+)
LOC103023712 NA coding upstream 614738 4873029 ~ 4884366 (+)
LOC103025087 NA coding upstream 629315 4859869 ~ 4869789 (+)
fbxo2 NA coding downstream 6432 5508308 ~ 5517565 (+)
wnt4 wnt4,wnt4a,LOC107565731,LOC107654388 coding downstream 223467 5725343 ~ 5731344 (+)
ap5b1 ap5b1 coding downstream 263573 5765449 ~ 5771297 (+)
cldn19 cldn19,LOC107654447,LOC107582397,LOC107751184,LOC107565733 coding downstream 316108 5817984 ~ 5835626 (+)
LOC111195362 NA coding downstream 644809 6146685 ~ 6147519 (+)
G187475 NA non-coding upstream 3690 5494470 ~ 5495414 (+)
G187471 NA non-coding upstream 7847 5490085 ~ 5491257 (+)
G187472 NA non-coding upstream 9274 5488960 ~ 5489830 (+)
G187473 NA non-coding upstream 11293 5487088 ~ 5487811 (+)
LOC111195360 NA non-coding upstream 495092 4991541 ~ 5004012 (+)
G187484 NA non-coding downstream 138946 5640822 ~ 5641056 (+)
G187487 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC105931589 non-coding downstream 199917 5701793 ~ 5763491 (+)
G187493 NA non-coding downstream 257641 5759517 ~ 5843830 (+)
G187583 NA non-coding downstream 383926 5885802 ~ 5886002 (+)
G187584 NA non-coding downstream 386957 5888833 ~ 5899725 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 2104261 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 2497089 2980497 ~ 3002015 (+)
podxl2 NA other upstream 4403767 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 4960888 510575 ~ 538216 (+)
G186231 NA other upstream 5384017 107396 ~ 115087 (+)
p3h1 NA other downstream 278015 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 1575289 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 1690278 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 2610127 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 2754920 8256796 ~ 8271712 (+)

Expression


Co-expression Network