G187493


Basic Information

Item Value
gene id G187493
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 5759517 ~ 5843830 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU254239
ACATAAGAGCAGTTTTGAAGTACTGAAATTCACAAATTAACCTAGAACCATAGTGATTTAGAGACTTGTTTTGGGATCAAGGCCATCCAAGCTAAGAAGAACAAACATGTCGAGAGTAGGATCAAAAATGTGCCTCAGAAAATGACTAATTGCCAAAAAATGGCAATTAGTGAGCCCAAGGTGTTCTCCTTAAATCGTAGCTAGCATGTTCAAAGTGACCAGCAGCATAATCTGGAGTCGGACCATGATTAAGATTAGCAAACCCCTAAAAAGAAAGGGATATATCGATACATCAGAGACAGAACCATGCAGACCTTCACTGCTGGCCTGGCCCAGGCTGTATGGTTGGAGCTCTGTTTGAAAAAAAGCTCAGCATTCCTCACCAGCCGTGgccacatttacacactgttgAGGAGACCAGCAGTTATGAGCTTTTCACTGTCCGCTCTCGCGCAGGCAATTTCTCTCAAAACATTAGGGGACATTATTTATGGCCATGTTGACCGGTTAGTGGGGCTCCAACCTCCCCATTGCGGGGACTGGGGCTTTGGCTTCCATAaagaaaaatagttaaagatgGACTGTGGATAGCAAAACAAGAGAGGCCTACTTTCTAGGGAAAACTGCACACGTAATTAAGAACAGTCTGTTTTCTCATTCCTACAGTAATGTTGGAGTAAGAAAACAGATTCCAGGTTTTATTATTACTGAGAAAAAAAGTTTATGGCACAATCTCCAAATTAGTGTTTAAATATGGAGtcaaaaaatccttttttaccTTTAGTGTGATTTGTTTGGACATGTGAGAATATAGTAATCATACCTGAATATGGACAGAAATTACCACATTTAAATGCGGATAATCTCGGTTCAGTCCCAAACCAAGGATAAAGCTACGATAAAGGACACATCCACATGTAGTATCTAGATATTTTCTAAATTGTTGCCTTTGCTCTGTGTTTTGGCCTTTCAGCCAATTGAATATGGAGATTAATTTTACTGATCATAAGTGTAGATTTCCAAAATTatgcttttaatatttttgtgcaaaatacAACAGTTAACTGGCCAACTGGATACACAAGTCACATTTGGAAAAAtctacaattacttcatttctAATAGACTGTGTCTAATTTctgatttctattttttaaatagtttttttattatgataagTGAAGCTAGGTTTTGAGATTGATGGTTTTAACAccttaaggccaatttatacttctgagTCAAACCTCAGCCgtagctgtgattggtccactggGCTTTGTTTTCCCGCCCACACATTCCCACCTTCGCAGTTTAAACTGTAGAGCGACGCAGAACCGCTAATACGTGCATGTAGAAGTATAGACGTGCTTCCGCTGCGTAGCAAACTGTCATCGATACACATAATCTACAGCGTAAGTTTGACAAAGAAATATAAGTTTGCCTTAAGTTTGCTAGAAAACCTTATTGTGATTGCTCTGTATTTAGGTCTAATTTGGCTATTAGGCTTTTTTTGGAGTCATTTTTCACATAAAAACTATGTTAAATGCTAGCGCCACCTCCTGGGCTGGCATgttcttttaaacattttatgacTTTTAAGGAATAAAGAGAGATTTTTTGAGAAATGCTgcgaaaaatagagaaaaaaaccctatattttcaaatattttcaTAGCGGAAAGTGAATTGCCAAACTCTCGTCTCTAAAACGCAGATACATTAGTGTCACCTCTTGTATAGCAGCTCAATGAGCCATTTGTGTTACACTTCACTGGAAGGTTTTTTACATCTCTTGTTACTGTAttacacaacatgttaacacaTGGCATTTCAATACTAAACAAAGACTCAGCAAACACAAGCACTTAGTAGGTAATTGATATGTTGGGCATCATGATGGTAAATTCTATGGCTTCataaaactagtttttattGAATTACTAAGATAGGAAACAAGTTCCCGGTTTTATTACTAAAAAATGTATGTGGCACAATCTCCAAAGTACTTTATCCTTTCTTCATGGGTGTGAATATAGTAATCGTACCTGAGTACGGACCAAAATGACCACACTGAGACCATTAATAGATTGGTTAGTTTGTGTTGAGAATATGATCTGACTTTGATCCAACTAAACTATCAGGTGTAGTCCATTGCGTCTTCATATCTACAAAATTAGCAAGATGTAGAGGGAGTCCATATGTAAAGGGAACTATTGGCTATATACTTGGTTTTAAACAAAGGCCTTTTATAAAAGGCATATAAAAGTGTCTATATCCAAAATAATGCACAATATACTCTATTTGGAGCTTTACTATTGGTCCATTCCTCATGAAAAATGATTTCTAAAGTATTAGACATAATGGACGTAGCGTTTGTGGTAATCAGGGCTTCTATCAATATTCAGGAGAATCCTGTGAGTCGCAGTAGAGGTGGGATGTCTGTGGTGAAGGAAGAGAGGAAAGGCTGTCTGGGTGTTTATTTACCAGCACTTTGGAGTTTGTATCTCATATTTTCACAGTTATTacttacaatatacaaaaatcCTAACCTTATACTGCCACCTGCCACTATAAgataaaaaatgacattttatatatacagtatatattttgtagcattttagccatttttttacCCATCAACCCAAAAGGgacagtatttttgtattagGATCTAAAAtgaagttttgtttttaattccCCTTCCTATATTCACTTAAAAAGACATACAGTTTATTGTAAACATATTCATACTCCTTGAactgtttcacattttgtcactttacagctttaatgtattttacagagattttaagtgatagacaaacacagagtAGCACATAATTGAAGTGACGTGAAATGAAAACGATACATGGTTTATAAAatttgaatcaaataaaaatctaaaacaaagtGTGATGATTTACTCTGAAactcctaaaaaataaaaagtcactCAATTAGTTAATGGAGTCCAGCACTGTACAATTTAgtttcagtataaatacacctgttctgtgaaggcctcagtggttgtTAGAGATCaatagtgaacaaacagcatcatgaagaccaaggaactcctctaaccagacaggtcagagataaagttgtgtaGAGAtgtaaagcagggttaggttgaAGGTTATTTTACAACTGCAAATCTAAGAACTTAAAGAAGACCCAAATTGACAGATTGAGCAAAGAGAGCACTGGTCAAAGAAGCAGCCACAAGAAgcaggcccatggtcactctgaaggagctgcagaaatccatgCTCTTGGCTGAGTTTTAGTTATTTACAAAGATGTAAATAGATAGACCTGCAGCTgtaatacttttgcacatcacatttttcaaatgtttatttgatttaaatttttGTAAACCacgcactctaaaaaacagaggtacgatatgagtacttttttgtactcaaaggtactctcttcataattgtaccctcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254239 True 3469 lncRNA 0.36 3 5759517 5843830

Neighbor

gene id symbol gene type direction distance location
wnt4 wnt4,wnt4a,LOC107565731,LOC107654388 coding upstream 28173 5725343 ~ 5731344 (+)
fbxo2 NA coding upstream 241952 5508308 ~ 5517565 (+)
LOC103021734 dnajc11,LOC107654442,LOC107751176,LOC103038967 coding upstream 273104 5472482 ~ 5486413 (+)
LOC103023081 LOC108441425 coding upstream 819452 4936994 ~ 4940065 (+)
tnfrsf9 NA coding upstream 864476 4887519 ~ 4895041 (+)
LOC111195362 NA coding downstream 302855 6146685 ~ 6147519 (+)
LOC103043936 nucks1,nucks1a,LOC108255091,LOC107654381 coding downstream 398197 6242027 ~ 6258457 (+)
LOC103043630 LOC108437608 coding downstream 432969 6276799 ~ 6288068 (+)
LOC103043323 LOC108437607 coding downstream 447970 6291800 ~ 6298905 (+)
elk4 elk4,LOC108437624 coding downstream 461964 6305794 ~ 6325915 (+)
G187484 NA non-coding upstream 118461 5640822 ~ 5641056 (+)
G187477 NA non-coding upstream 257641 5499104 ~ 5501876 (+)
G187475 NA non-coding upstream 264103 5494470 ~ 5495414 (+)
G187471 NA non-coding upstream 268260 5490085 ~ 5491257 (+)
G187472 NA non-coding upstream 269687 5488960 ~ 5489830 (+)
G187583 NA non-coding downstream 41972 5885802 ~ 5886002 (+)
G187584 NA non-coding downstream 45003 5888833 ~ 5899725 (+)
G187610 NA non-coding downstream 261362 6105192 ~ 6178630 (+)
G187640 NA non-coding downstream 457022 6300852 ~ 6302749 (+)
G187645 NA non-coding downstream 458936 6302766 ~ 6304222 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 2364674 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 2757502 2980497 ~ 3002015 (+)
podxl2 NA other upstream 4664180 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 5221301 510575 ~ 538216 (+)
G186231 NA other upstream 5644430 107396 ~ 115087 (+)
LOC103029365 NA other downstream 1233335 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 1348324 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 2268173 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 2412966 8256796 ~ 8271712 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other downstream 3439965 9283795 ~ 9819955 (+)

Expression


Co-expression Network