p3h1


Basic Information

Item Value
gene id p3h1
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 5779891 ~ 5798979 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU254245
tcttGTAAAAACACCACATTAGAACAGATACAGGTACACATACATAcaggaaatacatttttaaagctGTTTTTAAACTAGTTTGAAGAACAAAGCTTTGGTTCCAGATCTCTTCTGTACGTCTGCAGCTAGAGTCCATAATTGATGTGTtcaattccatcagcagctcacctgatttaacatcattaaGCACTGATTTATCAAACCAAGTGTTGATGTAGTGATGAACGGAGGATGACTTTGGAGATGTAAAACCACTACTGTCTGTATGAATGCTATTTGTATTTAGTTATTCTATTAATAGTGTTTTCACTTACTGTCcagaatgtttttaattataattttcacATGTGCCTTAAAATTTTGCccagtatttttatatattaagttagtataaagtttttaaaacagaaaaaaacagttcaatCTCAGGAAAGGAAGTCCTATCATAGCTGGT
>XM_022682303.1
ACTCCACCTCCAGCAAAACCTTCCCCCAGCCAGGCCAGAGCTGTGGATGTGGATGTGGATGCGGTGACTCCAGTCTGCAGCAGTAGCAGAGCTCAGGATCTCCAGCATGTGGGCCTCGGTGCTTCTCTCAACTCTGGCTGTATCAGTTTTGGACTGTTCTTCAGGGAGCGTCCAGTTTAATGGAGTTCTGGAGCCCTACGACCTGCTGTTTGATAATGCGGTGGAGGCCTACTACAGGCAGGACTGGCTGTCTGTGATTCTGAATATGGAGAGAGCTCTGAGGAATAAAGGCATGATCCGGAGGGTCCGGACCGAGTGCCGACTCGCCTGCGCCAACCACACCGGCTTTGGAGAGCCCGTTCCCGGCGTGGCGGCGCCGCCGGTCCCCGGGGCTGGGTCTCTGGAGGACTTAGGGTTTTTCCAGAAAGTGCTGAAGCGGGCGGAGTGTGTGAGCGCCTGCGAAGCGGAGAAACTGGGACCACCGTCTCTGCACAAAGTTAGCGAAGCAGTTGAGCTGGAGTTTAAGAAGAGGACCCCTTATAATTACCTGCAAGTGgcttattttaagATAAACAAGCTTGATAAAGCAGTGGCCGCAGCAAATACCTTCTACATTGCGAACCCTGATCATGTAGAGATGAGGCAGAACCTGGAGTACTACAGTCTGATGGCTGGAGTGCAGGAGGCTGACTTCAAGGACTTAGAGGCCAGACCCCACATGGCAGAGTTTCTGGCTGGGAAGAAGCTGTACAGTGCAGAGAGTTTCTCGCCAGCCATCGATCACTTTGAGGCAGCTGTGGATGAGTATTTCACTGCAGACGCTGAGTGCAGGGTGCTGTGTGAGGGAGCGTATGACTACGACGGGTACAACTACATGGAGTACAAAGCTGACCTCTTCCAGTCCATCACAGatCACTACCTGCACATTCTGAACTGCAAGCAGAACTGCGCTGTGGAACTGGCCTCCACTGCTGGAATGGATAAGCCGATTGAGGACTTCCTTCCTGCACATTTCAACTACCTGCAGTTTTCCTATTACAACAGTGAGAAATATGAGAAGGCTATTGAGAGCGCTAAAACCTACCTACTGTTCCATCCTGAGGATGAGGTCATGAAGCAGAACTTGGCGTACTACTCGGCTGTGCTCGGCGAGGAAAAGGCTGCAGACATCTCAGCCATGGAGGTTGTTGAGCAGTACATCAAGAAGTCCGTGCTGGAGAAAGAGCTCCTTTATTTTGGTTATGAAATTTTTGGAATCACTTTTGTCGATCCAGACACTTGGACTCCCGCAGAAGTTATGCCTAAGAAACTACGAGACAAGCAGAAGGCGGACAGAGAGACAGCTGCCCGGATTACAGAGGAGATTGGCAATCTGATGAAAGAGATTGAGacgctggtggaggagaagaccAAGGAATCAACAGACATCGCAAAAACAATTAATGATGGACCCAACATAGAATCACCTCTTCCAGCAGACAAGCCGGTGGCTGATGCCGTCACAGTTACCATGACCTCCGCGGCTCTGAACGGATCTCAGAGAGTAGTGCTGGATGGGGTCGTCACAGACAACGAATGCCGGGAATTACACAGACTCTCCAATGTAGCAGCACAGAGCGGTGACGCCTACAGGGGTCAGACAAACCCTCATTCACCAAGCGAGATGTTCCAGGGGATCACTGTTCTCAAGACTCTGAAGCTCGGTCAGGAGGGACTGCTCCCTGTGAAGAGCGCTCGTCTGTTTTTCGACCTCAGTGAGAAAGTGCGTAAAGTAGTGGAGTCCCACTTCAGCCTGGAGACTCCGCTCTACTTCTCTCACTCACATCTGCTCTGCCGCTCAGCCAATGAGGAGAAGCAAGAGGACCCGAGTCACCCTGTACATGCTGACAACTGTCTGCTGATCTCAGAACTTAATGAGTGCATAAAAGAGAcatccacatacacacaccaagACTACAGcgcCATTCTCTATCTCAATGATGACTTTGAAGGGGGTGATTTCATCTTTACAGAACTGGATGCTGAAACAGTCACAGCTGTGGTGAGGCCTCAGTGTGGCAGAGTCGTGGCTTTCGGTGGGAGCAAGGAGAATCTCCATGGGGTAAGAGCAGTGACCAAAGGCCAGCGCTGTGCTGTGGTGCTGTGGTTCACTCTGGATCCCAAACACAACGAGAAGGAGCGAATTGAAGCTGAGGAGCTCCTAAAAGTTCTCTCCAATCCATTGGATAAAGATTTCCAGCCAACAGAGAAGGACAAGTCAGAGCCACAGAACACAGAGCAGGACAAGACGGAGACACCTGTGCAGGAACAGCCCAGCAAAGCCTCTGATGAACAGACCGACACTGCAGCTGATACAAAGACAGACAACAAAGACGTTAAAAAGGATGCGCAGCCAAAGGCTAAatctgcaaacaaaacaaaggaCAAATCAGTGGACAAAAAAGAGAAGTCTGTGGACAAGAAGACGGTAAAAGTAGCCAAAACAGCCACCCAGACGAAAGCGAAACCATCAGGAAAAACGAAAGAGGCAGACAAAACAAAGGccaaaacagcagaaaaaacaaaggccaaaacagcagaaaaaacaAAAGCCAAAACAGCAGACAAAACAAAGGAGAAGTCAGTGGACAAGAAGACAGTAAAAGTAGTGTCTAAAAAGACTGGTGGCACAGAAAGCAAAAAACCCAAAGCAAAAACCTCCACGCAGAAAGACTCTAAATCAAACTCACaacaagataaagataaagatgagttgtgagtgttttttaaatgaatctttattttctaatttttagtttctactttttttcttttgccatTTCTTTGTGATGGGAACAATTTTATTGCCCCTTTTTATGCCACATAATGACAAAATTGAATCTATAGCGTGGACTGAAGTCATGAATTACACAAGttattcatgtttaaagtttttttcttgtaaaaaCACCACATTAG

Function

NR:

description
prolyl 3-hydroxylase 1

GO: NA

KEGG:

id description
K08134 P3H1; procollagen-proline 3-dioxygenase 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU254245 False 457 lncRNA 0.32 2 5797180 5798979
XM_022682303.1 True 2958 mRNA 0.49 15 5779891 5798591

Neighbor

gene id symbol gene type direction distance location
ap5b1 ap5b1 coding upstream 8594 5765449 ~ 5771297 (+)
wnt4 wnt4,wnt4a,LOC107565731,LOC107654388 coding upstream 48547 5725343 ~ 5731344 (+)
fbxo2 NA coding upstream 262326 5508308 ~ 5517565 (+)
LOC103021734 dnajc11,LOC107654442,LOC107751176,LOC103038967 coding upstream 293478 5472482 ~ 5486413 (+)
LOC103023081 LOC108441425 coding upstream 839826 4936994 ~ 4940065 (+)
cldn19 cldn19,LOC107654447,LOC107582397,LOC107751184,LOC107565733 coding downstream 19005 5817984 ~ 5835626 (+)
LOC111195362 NA coding downstream 347706 6146685 ~ 6147519 (+)
LOC103043936 nucks1,nucks1a,LOC108255091,LOC107654381 coding downstream 443048 6242027 ~ 6258457 (+)
LOC103043630 LOC108437608 coding downstream 477820 6276799 ~ 6288068 (+)
LOC103043323 LOC108437607 coding downstream 492821 6291800 ~ 6298905 (+)
G187487 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC105931589 non-coding upstream 16400 5701793 ~ 5763491 (+)
G187484 NA non-coding upstream 138835 5640822 ~ 5641056 (+)
G187477 NA non-coding upstream 278015 5499104 ~ 5501876 (+)
G187475 NA non-coding upstream 284477 5494470 ~ 5495414 (+)
G187471 NA non-coding upstream 288634 5490085 ~ 5491257 (+)
G187583 NA non-coding downstream 86823 5885802 ~ 5886002 (+)
G187584 NA non-coding downstream 89854 5888833 ~ 5899725 (+)
G187610 NA non-coding downstream 306213 6105192 ~ 6178630 (+)
G187640 NA non-coding downstream 501873 6300852 ~ 6302749 (+)
G187645 NA non-coding downstream 503787 6302766 ~ 6304222 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 2385048 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 2777876 2980497 ~ 3002015 (+)
podxl2 NA other upstream 4684554 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 5241675 510575 ~ 538216 (+)
G186231 NA other upstream 5664804 107396 ~ 115087 (+)
LOC103029365 NA other downstream 1278186 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 1393175 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 2313024 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 2457817 8256796 ~ 8271712 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other downstream 3484816 9283795 ~ 9819955 (+)

Expression


Co-expression Network