svbp (svbp)


Basic Information

Item Value
gene id svbp
gene name svbp
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 5518793 ~ 5522921 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU254321
tgctagctagctagccagttaCTGTTTATCTTCTTTTAAGACATTTACCTGACGTGCTAACGTTATAATAACGTTTTAATATTCATTACCTCCGATTGTAGCTTGTCTGGAATCTTCCAGAAGGAACACTGAGCCACAGGAGCAATCACAAAACGATGGAGCCCGCATGTCGAAAAGACAAGCAGAAGCAGAAAGAGACTCCAACACGAGGAGACAGAGCTAAACAGAAATCTGCACAGCAGGAGCTCAAGCAGAGACAGAGGGCAGAGATCTACGCCCTGAACAAAGTGATGACAGAACttgagcagcagcagtttgacaCCTTCTGCAAGCAAATGCAGACACCAGCAGAATGAAGATGAGCCATGTTCACTCTAGCACTGGAGATGAACCCGACTGGACTAGCAGGAAATTGAATCTGTGGGTTTGTGAACTTTGGCATTGAGTTGAACAACTTTGCTGCATAAAAACAGCCATTTCGGGACCAGCTTTGTAGTTTATCCCCAGATATTATGTATCGACAGAGCATAACATGCATTTACCACTGTGTGGTTAAACGCAAAACCAATACAGAAACAATATAGATCAGTCTCTCCATAAAACTGTTTGTATGGGTCTATAGACCCATATGTAGAAACATATGTTGTCAACCTGTTGTTGCACACCTTTTTCCGTTTGACCACACTGCTGCGTTTTACATCATAGTCATCACAAGAAGAGCGTATAGAGAGTGTTTGTACAATACAGCATATTGCATGATTTCAGAGCAGCGTGATTAGATTAGAATTAAAAGACAATCAATATGCAGGTATATCAGTATTTGCAGTAGTGATGTAGGAtactttattttgaaattgaTACCTATATAATCAACTTATTTCACAATAAACCACTTTGTTAGAACAATTGTAGAAGCAGAACACTAAACACTTTATCAAATCCAAAATGTTCAACATTGGTGCTATGTATCAACCCACACTTTTCAAACAATCTGAAGGATAGATTTTTGTAATGTCATCATTTCTTCCAAAATTACAAGTCACGGTTTTACAACATGTTACACTTTGTATTACGTCTTTGTATGGTTTTAAAGAATGTGTCACTCAGTAGGCTGTTATTCACTTGTATtttaatctttgtttttaatctttatttaaatgattgtCTGTCAgccacttataaccactaacaTTTTTGTGTGTCAGTAACG
>XM_007251418.3
agaggagtcGGGGTTATTTCCCTGTAACACCGGGATGCCTGCCTGCTGCTAAcgctgctagctagctagccagttaCTGTTTATCTTCTTTTAAGACATTTACCTGACGTGCTAACGTTATAATAACGTTTTAATATTCATTACCTCCGATTGTAGCTTGTCTGGAATCTTCCAGAAGGAACACTGAGCCACAGGAGCAATCACAAAACGATGGAGCCCGCATGTCGAAAAGACAAGCAGAAGCAGAAAGAGACTCCAACACGAGGAGACAGAGCTAAACAGAAATCTGCACAGCAGGAGCTCAAGCAGAGACAGAGGGCAGAGATCTACGCCCTGAACAAAGTGATGACAGAACttgagcagcagcagtttgacaCCTTCTGCAAGCAAATGCAGACACCAGCAGAATGAAGATGAGCCATGTTCACTCTAGCACTGGAGATGAACCCGACTGGACTAGCAGGAAATTGAATCTGTGGGTTTGTGAACTTTGGCATTGAGTTGAACAACTTTGCTGCATAAAAACAGCCATTTCGGGACCAGCTTTGTAGTTTATCCCCAGATATTATGTATCGACAGAGCATAACATGCATTTACCACTGTGTGGTTAAACGCAAAACCAATACAGAAACAATATAGATCAGTCTCTCCATAAAACTGTTTGTATGGGTCTATAGACCCATATGTAGAAACATATGTTGTCAACCTGTTGTTGCACACCTTTTTCCGTTTGACCACACTGCTGCGTTTTACATCATAGTCATCACAAGAAGAGCGTATAGAGAGTGTTTGTACAATACAGCATATTGCATGATTTCAGAGCAGCGTGATTAGATTAGAATTAAAAGACAATCAATATGCAGGTATATCAGTATTTGCAGTAGTGATGTAGGAtactttattttgaaattgaTACCTATATAATCAACTTATTTCACAATAAACCACTTTGTTAGAACAATTGTAGAAGCAGAACACTAAACACTTTATCAAATCCAAAATGTTCAACATTGGTGCTATGTATCAACCCACACTTTTCAAACAATCGTTGTtacattttattgtcatttttggtGAAAATCTGAAGGATAGATTTTTGTAATGTCATCATTTCTTCCAAAATTACAAGTCACGGTTTTACAACATGTTACACTTTGTATTACGTCTTTGTATGGTTTTAAAGAATGTGTCACTCAGTAGGCTGTTATTCACTTGTATtttaatctttgtttttaatctttatttaaatgattgtCTGTCAgccacttataaccactaacaTTTTTGTGTGTCAGTAACGttgtatttaataaatgcatatttttaaCAA
>XR_002651590.1
gaggagtcGGGGTTATTTCCCTGTAACACCGGGATGCCTGCCTGCTGCTAAcgctgctagctagctagccagttaCTGTTTATCTTCTTTTAAGACATTTACCTGACGTGCTAACGTTATAATAACGTTTTAATATTCATTACCTCCGATTGTAGCTTGTCTGGAATCTTCCAGAAGGAACACTGAGCCACAGGAGCAATCACAAAACGATGGAGCCCGCATGTCGAAAAGACAAGCAGAAGCAGAAAGAGACTCCAACACGAGGAGACAGAGCTAAACAGAAATCTGCACAGCAGGAGCTCAAGCAGAGACAGAGGGCAGAGATCTACGCCCTGAACAAAGTGATGACAGAACttgagcagcagcagtttgacaCCTTCTGCAAGCAAATGCAGACACCAGCAGAATGAAGATGAGCCATGTTCACTCTAGCACTGGAGATGAACCCGACTGGACTAGCAGGAAATTGAATCTGTGGGTTTGTGAACTTTGGCATTGAGTTGAACAACTTTGCTGCATAAAAACAGCCATTTCGGGACCAGCTTTGTAGTTTATCCCCAGATATTATGTATCGACAGAGCATAACATGCATTTACCACTGTGTGGTTAAACGCAAAACCAATACAGAAACAATATAGATCAGTCTCTCCATAAAACTGTTTGTATGGGTCTATAGACCCATATGTAGAAACATATGTTGTCAACCTGTTGTTGCACACCTTTTTCCGTTTGACCACACTGCTGCGTTTTACATCATAGTCATCACAAGAAGAGCGTATAGAGAGTGTTTGTACAATACAGCATATTGCATGATTTCAGAGCAGCGTGATTAGATTAGAATTAAAAGACAATCAATATGCAGGTATATCAGTATTTGCAGTAGTGATGTAGGAtactttattttgaaattgaTACCTATATAATCAACTTATTTCACAATAAACCACTTTGTTAGAACAATTGTAGAAGCAGAACACTAAACACTTTATCAAATCCAAAATGTTCAACATTGGTGCTATGTATCAACCCACACTTTTCAAACAATCTGAAGGATAGATTTTTGTAATGTCATCATTTCTTCCAAAATTACAAGTCACGGTTTTACAACATGTTACACTTTGTATTACGTCTTTGTATGGTTTTAAAGAATGTGTCACTCAGTAGGCTGTTATTCACTTGTATtttaatctttgtttttaatctttatttaaatgattgtCTGTCAgccacttataaccactaacaTTTTTGTGTGTCAGTAACGttgtatttaataaatgcatatttttaaCAAGA

Function

symbol description
svbp Predicted to enable microtubule binding activity. Predicted to be involved in axon development; proteolysis; and regulation of metallopeptidase activity. Predicted to be located in cytoplasm; cytoskeleton; and extracellular region. Orthologous to human SVBP (small vasohibin binding protein).

NR:

description
PREDICTED: small vasohibin-binding protein

GO: NA

KEGG:

id description
K23357 SVBP; small vasohibin-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU254321 False 1210 lncRNA 0.38 4 5518825 5522866
XM_007251418.3 True 1330 mRNA 0.38 3 5518795 5522921
XR_002651590.1 False 1296 misc_RNA 0.38 4 5518793 5522920

Neighbor

gene id symbol gene type direction distance location
LOC103022065 NA coding downstream 51918 4994997 ~ 5466875 (-)
per3 per3,LOC108441424,LOC107654358,LOC107592896 coding downstream 545947 4946572 ~ 4972846 (-)
LOC103024768 LOC108441423 coding downstream 584189 4900015 ~ 4934604 (-)
LOC103024243 NA coding downstream 661484 4843232 ~ 4857309 (-)
LOC103025299 NA coding downstream 694718 4810683 ~ 4824075 (-)
LOC103046070 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC103465423,LOC100691174,LOC101164400,LOC108248645 coding upstream 223969 5746890 ~ 5763512 (-)
c22h1orf50 cunh1orf50,zgc:112255,LOC107654415,LOC107654365,LOC107565729,LOC107582467,LOC107756638,LOC107751182 coding upstream 248889 5771810 ~ 5776145 (-)
LOC103023821 epha8,LOC107565732,LOC107756634,LOC107654383,LOC107582396 coding upstream 394585 5917506 ~ 6076714 (-)
LOC103042703 LOC103042703,LOC108437606 coding upstream 816707 6339628 ~ 6378764 (-)
cdk18 cdk18,si:dkey-166c18.1,LOC108254840,LOC107654374,LOC107756627,LOC107698687 coding upstream 872469 6395390 ~ 6502396 (-)
G187548 NA non-coding downstream 9062 5508285 ~ 5509731 (-)
LOC111195361 NA non-coding downstream 17024 5500995 ~ 5501769 (-)
G187545 NA non-coding downstream 26127 5491381 ~ 5492666 (-)
G187432 NA non-coding downstream 647973 4869891 ~ 4870820 (-)
G187431 NA non-coding downstream 649005 4868925 ~ 4869788 (-)
G187555 NA non-coding upstream 177951 5700872 ~ 5706342 (-)
G187569 p3h1,LOC107756620 non-coding upstream 259237 5782158 ~ 5783592 (-)
G187572 NA non-coding upstream 274227 5797148 ~ 5798963 (-)
G187573 NA non-coding upstream 274955 5797876 ~ 5798568 (-)
G187578 NA non-coding upstream 305747 5828668 ~ 5835626 (-)
phf13 phf13 other downstream 13046 5493412 ~ 5505747 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other downstream 529535 4974228 ~ 4989258 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other downstream 1357839 3970934 ~ 4160954 (-)
LOC107197677 NA other downstream 1739073 3778014 ~ 3779720 (-)
G187154 NA other downstream 1743950 3765863 ~ 3774843 (-)
LOC111195363 snrpe other upstream 1454730 6977651 ~ 6982840 (-)
pdrg1 pdrg1 other upstream 1665695 7188616 ~ 7193252 (-)
G187946 mybl2,mybl2b other upstream 1865476 7388397 ~ 7391026 (-)
ghrh ghrh,LOC103034597,LOC108438619 other upstream 1886201 7409122 ~ 7419806 (-)
LOC111195437 NA other upstream 4428163 9951084 ~ 9956317 (-)

Expression


Co-expression Network