G187580


Basic Information

Item Value
gene id G187580
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 5853417 ~ 5854325 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU254358
tcaaggattcaaggattcaaggagattttattgtcattcgcatcacatgtggtacatgaggtggaacgaaattgtgatctcacgatccagttttacacccaaagagctgttattaatagatatatagataaaaaaaagaatacaataaaagaaatagaatatacaaaatagatagataaatatcccaagaataaaaaaaataaatagagagtagaaggttcagcaacatgaagtccagagtgcaagtgtgctatagcagcatgataatgtgaattagagcagtggagataaagtgtctcagtgcaagtaaagtgaccatgttggtaaacagtaaacagtaatttgtccttggtgtcagtgcagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254358 True 364 lncRNA 0.34 2 5853417 5854325

Neighbor

gene id symbol gene type direction distance location
c22h1orf50 cunh1orf50,zgc:112255,LOC107654415,LOC107654365,LOC107565729,LOC107582467,LOC107756638,LOC107751182 coding downstream 77272 5771810 ~ 5776145 (-)
LOC103046070 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC103465423,LOC100691174,LOC101164400,LOC108248645 coding downstream 89905 5746890 ~ 5763512 (-)
LOC103022065 NA coding downstream 386542 4994997 ~ 5466875 (-)
per3 per3,LOC108441424,LOC107654358,LOC107592896 coding downstream 880571 4946572 ~ 4972846 (-)
LOC103024768 LOC108441423 coding downstream 918813 4900015 ~ 4934604 (-)
LOC103023821 epha8,LOC107565732,LOC107756634,LOC107654383,LOC107582396 coding upstream 63181 5917506 ~ 6076714 (-)
LOC103042703 LOC103042703,LOC108437606 coding upstream 485303 6339628 ~ 6378764 (-)
cdk18 cdk18,si:dkey-166c18.1,LOC108254840,LOC107654374,LOC107756627,LOC107698687 coding upstream 541065 6395390 ~ 6502396 (-)
LOC103022878 NA coding upstream 958083 6812408 ~ 6828711 (-)
sox13 sox13 coding upstream 1043666 6897991 ~ 6948954 (-)
G187578 NA non-coding downstream 17791 5828668 ~ 5835626 (-)
G187572 NA non-coding downstream 54454 5797148 ~ 5798963 (-)
G187573 NA non-coding downstream 54849 5797876 ~ 5798568 (-)
G187569 p3h1,LOC107756620 non-coding downstream 69825 5782158 ~ 5783592 (-)
G187555 NA non-coding downstream 147075 5700872 ~ 5706342 (-)
G187581 NA non-coding upstream 135 5854460 ~ 5854832 (-)
G187587 NA non-coding upstream 54195 5908520 ~ 5908818 (-)
G187588 NA non-coding upstream 55741 5910066 ~ 5910356 (-)
G187622 NA non-coding upstream 183030 6037355 ~ 6038183 (-)
G187623 NA non-coding upstream 186018 6040343 ~ 6182890 (-)
svbp svbp other downstream 330496 5518793 ~ 5522921 (-)
phf13 phf13 other downstream 347670 5493412 ~ 5505747 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other downstream 864159 4974228 ~ 4989258 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other downstream 1692463 3970934 ~ 4160954 (-)
LOC107197677 NA other downstream 2073697 3778014 ~ 3779720 (-)
LOC111195363 snrpe other upstream 1123326 6977651 ~ 6982840 (-)
pdrg1 pdrg1 other upstream 1334291 7188616 ~ 7193252 (-)
G187946 mybl2,mybl2b other upstream 1534072 7388397 ~ 7391026 (-)
ghrh ghrh,LOC103034597,LOC108438619 other upstream 1554797 7409122 ~ 7419806 (-)
LOC111195437 NA other upstream 4096759 9951084 ~ 9956317 (-)

Expression


Co-expression Network