G187640


Basic Information

Item Value
gene id G187640
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 6300852 ~ 6302749 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU254445
CTTACTGCTTTAGTGTGCCCTGAATTGCCTTACCTTTGTTAATTGGCTTCAAATGTGGGGAAAAAAGGGTCTCATTCAAACTGCAAAATCAAAGAGAAAAAAGTTTTTCCCTTTTTCGTTTTCTGATTTTACATTTAATGATTATCATTTGGATACTACATACACCGACCCATCAGATATTTGCTTCAAGAGAagatacatatttaataattttataaatactGTTTGAGAAAGCCAGAAATGAAGctagaaaattgaaaaaaaaaaaatagatgaaaacctgtttctttttttctatatttgatGCAAGTTTTTCATATGATTTTCAGTTCTTGGTCAGAAAATTGAGCTGATAGTAAATCTTACATCACTAGGACCCAGCCAGTGGGAGCATggttaattgtgctctctcgggctccggctgctgatgctgaagcagCTTGACCTGCTAATTAAATGTGCAATTCTGGGGCCATATAGCCACAAAGTaactatatagtgcactatttctgTAATAGGGAGCAATTCAGAACACAGGTCATGTTTACATTAGGTCAGCTCAGATGTTCTTTATGGTCAGTGTTCTATGGTCTGCCCTCTGGTGCTATATAAAACAGTTACATCTACACACTGTTGTACTTTATGCATTTGAAGTACCAACAATTTAAGGAAGAATTTCAACAAGTTTTATGAACCTTCTGACCTTCTGTCCTTTTCTCATAAAGAATGATCTACAAGCAGCACAGGCTTTTAGAACGACCTTCACAGTCGCCTGACTTTAACATCATTCAAAACCTGTGGGTGGGAGCAGtctaaaaatattgcagaacTAGAAGCACTTAGAAGTGAAGAGTGGGtgaaaattctttaaaaaaaagagcagaaagacTCTGAGCTAAACTGACTAAAAGTAAGTAATTATTGTTATTCCACCCTGTGCTAAAAAAAGGTTCCAAAACTAAAATATCTaactgtacattaatattattactgttatccTTAAACCTATATCCTATATATTTCTTACAGAAGAAGGAAAGGGCTTTtttaagtcaatgtaaaaatgaacAAGAAACTAAGATTTTCATTGACCTAGAGGTGTGTCAGTATATAACTGCTGCTATAACTGTATAATcatttttctatcaacacaaacACTGCAGTATATTTACACACATGCTACTGatacttcatactggataataCTATTGCTTACCTAATCCTCATACTttttaatgttctaattttGATAGTTTGCAATAATTATAAACTTAATTGCTCTCTGTTGGCAACAGAATGCCTGaagtaaacttaaaaaatatgttttcccAGAGTGAACTTGAACAGCACTTGAACAGAAATCACATCATACGTCCGATCTCCAAAAGTACAAACTTCTGACGTGACTTAGAATCAGAATTAGCTCTTATTAACAAGACCCTAGATCAGCGTTCCTACTCTGAGAAGCTTCATGAACGACGGCCCttaaattgttcttttatttttgacaaTTCAGTCTTTCTGTGGATTTGTATAAGAATGCTATTGGTAATAATCATGAATAATTGCCATTCCCTTCCTGTTTTGACCGCAAACCTCACCTGTTATGTAGCAACCGGCTTAACCTGTTACACAGTAACTGAATTCACATGTTACTTTGTAACTGATTTTTCCTGTTACATGGTAACCAGCTTAATCTGTTACAAAGTAATTGATTTTGCATGTTACTTGGTAAC
>TU254446
ATCTTACATCACTAGGACCCAGCCAGTGGGAGCATggttaattgtgctctctcgggctccggctgctgatgctgaagcagCTTGACCTGCTAATTAAATGTGCAATTCTGGGGCCATATAGCCACAAAGTaactatatagtgcactatttctgTAATAGGGAGCAATTCAGAACACAGGTCATGTTTACATTAGGTCAGCTCAGATGTTCTTTATGGTCAGTGTTCTATGGTCTGCCCTCTGGTGCTATATAAAACAGTTACATCTACACACTGTTGTACTTTATGCATTTGAAGTACCAACAATTTAAGGAAGAATTTCAACAAGTTTTATGAACCTTCTGACCTTCTGTCCTTTTCTCATAAAGAATGATCTACAAGCAGCACAGGCTTTTAGAACGACCTTCACAGTCGCCTGACTTTAACATCATTCAAAACCTGTGGGTGGGAGCAGtctaaaaatattgcagaacTAGAAGCACTTAGAAGTGAAGAGTGGGtgaaaattctttaaaaaaaagagcagaaagacTCTGAGCTAAACTGACTAAAAGTAAGTAATTATTGTTATTCCACCCTGTGCTAAAAAAAGGTTCCAAAACTAAAATATCTaactgtacattaatattattactgttatccTTAAACCTATATCCTATATATTTCTTACAGAAGAAGGAAAGGGCTTTtttaagtcaatgtaaaaatgaacAAGAAACTAAGATTTTCATTGACCTAGAGGTGTGTCAGTATATAACTGCTGCTATAACTGTATAATcatttttctatcaacacaaacACTGCAGTATATTTACACACATGCTACTGatacttcatactggataataCTATTGCTTACCTAATCCTCATACTttttaatgttctaattttGATAGTTTGCAATAATTATAAACTTAATTGCTCTCTGTTGGCAACAGAATGCCTGaagtaaacttaaaaaatatgttttcccAGAGTGAACTTGAACAGCACTTGAACAGAAATCACATCATACGTCCGATCTCCAAAAGTACAAACTTCTGACGTGACTTAGAATCAGAATTAGCTCTTATTAACAAGACCCTAGATCAGCGTTCCTACTCTGAGAAGCTTCATGAACGACGGCCCttaaattgttcttttatttttgacaaTTCAGTCTTTCTGTGGATTTGTATAAGAATGCTATTGGTAATAATCATGAATAATTGCCATTCCCTTCCTGTTTTGACCGCAAACCTCACCTGTTATGTAGCAACCGGCTTAACCTGTTACACAGTAACTGAATTCACATGTTACTTTGTAACTGATTTTTCCTGTTACATGGTAACCAGCTTAATCTGTTACAAAGTAATTGATTTTGCATGTTACTTGGTAACTAGTAACTGAATTCATCTGTTACATAGTAACTGGCTTAACCAGTTACATATTAATAAGAATTGCATTTGAATTTACTTGGTAACTGAATTCAGTTGTTACGTAGTAACCAGGTTAACCTGTTACATAGTAATTGAATTTGCATGTTACTTGGTAACTGAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254445 True 1736 lncRNA 0.35 1 6300852 6302587
TU254446 False 1539 lncRNA 0.35 1 6301211 6302749

Neighbor

gene id symbol gene type direction distance location
LOC103043323 LOC108437607 coding upstream 1947 6291800 ~ 6298905 (+)
LOC103043630 LOC108437608 coding upstream 12784 6276799 ~ 6288068 (+)
LOC103043936 nucks1,nucks1a,LOC108255091,LOC107654381 coding upstream 42395 6242027 ~ 6258457 (+)
LOC111195362 NA coding upstream 153333 6146685 ~ 6147519 (+)
cldn19 cldn19,LOC107654447,LOC107582397,LOC107751184,LOC107565733 coding upstream 465226 5817984 ~ 5835626 (+)
elk4 elk4,LOC108437624 coding downstream 3045 6305794 ~ 6325915 (+)
klhdc8a klhdc8a,LOC108281025,LOC107743283,LOC107700004,LOC107582463,LOC107654360,LOC107581204 coding downstream 401347 6704096 ~ 6724573 (+)
LOC103041666 slc41a1,LOC107698497,LOC107654373,LOC108254937 coding downstream 455459 6758208 ~ 6801469 (+)
LOC103041362 etnk2,LOC106565623,LOC106583121,LOC103370992 coding downstream 549760 6852509 ~ 6883415 (+)
LOC103040557 yod1 coding downstream 680864 6983613 ~ 6987964 (+)
G187610 NA non-coding upstream 122222 6105192 ~ 6178630 (+)
G187584 NA non-coding upstream 401127 5888833 ~ 5899725 (+)
G187583 NA non-coding upstream 414850 5885802 ~ 5886002 (+)
G187493 NA non-coding upstream 457022 5759517 ~ 5843830 (+)
G187487 cdc42,LOC107083933,LOC100697482,LOC107395067,LOC103386293,LOC108435227,LOC105931589 non-coding upstream 537361 5701793 ~ 5763491 (+)
G187645 NA non-coding downstream 17 6302766 ~ 6304222 (+)
G187637 NA non-coding downstream 15065 6317814 ~ 6334469 (+)
G187647 NA non-coding downstream 34363 6337112 ~ 6340403 (+)
G187650 NA non-coding downstream 40418 6343167 ~ 6388440 (+)
G187659 NA non-coding downstream 85768 6388517 ~ 6389373 (+)
p3h1 NA other upstream 501873 5779891 ~ 5798979 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other upstream 2906009 3392387 ~ 3394843 (+)
G186880 lmcd1 other upstream 3298837 2980497 ~ 3002015 (+)
podxl2 NA other upstream 5205515 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 5762636 510575 ~ 538216 (+)
LOC103029365 NA other downstream 774416 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 889405 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 1809254 8112003 ~ 8113242 (+)
agtrap agtrap other downstream 1954047 8256796 ~ 8271712 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other downstream 2981046 9283795 ~ 9819955 (+)

Expression


Co-expression Network