pdrg1 (pdrg1)


Basic Information

Item Value
gene id pdrg1
gene name pdrg1
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 7188616 ~ 7193252 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU254804
TAATTACTCGCTGTGTGAggagctgtgctgctgctgctgtaggaGGGAGATGGACTCCAGCAGGGTGATGGAGTATCTGATGGAGGTAGAAGTGGCAGCTGAAGACGTGCTCGCTGATAAACAGCAGATTGTAGACCTTGACGCAAGAAGGAACAGAAATCGAGAAGCGATGAATGCTCCCGAAATAGTGCTGACAGTGATAAAGTAAAAGTCTGCTTTGGAAACATGTTCATAAAATTCCCCAAGGAGAATGCTCAAGCCATGATGCAGAAAGATCAGGAACAGCTTGACCAAGAGATAACTGACCTCAGGAAACGTCTAAAAGCGAAAGTAAATCATCTCAATGACTTACAAGGAAAGCCTGAACTCAGGGGCTACAACCTCTCTCCACTTAGCAATGATGAACTGAAAGCAGTTAATAGCATCCTGAAGAGATAGGATGACTCGAGACAATGGTGCAGTCCAGAGACTTGAATTTCAGGTGAAAACCTGATGCCAGACCCATGTTTAAACTTGAGTGTGCAATTAGGGGGAGTGTGGGGGAACATATGAAGTCAAGTGAACTCTAAAATCAAGCAGGAGGAAGATTTTTCTACAAACAGCATGAGGACATTTTGTTCAGATATgcaataatacacacacaagtgGACTACAGCGATACACCTATTGACACACATACTTATAAAATCTAGAGTtttgagtgtgttgagtgtgtaagtgttaagTTCGGCTAATgtgtgatttaaaaatataacatttttattgtaaatgtttaattaagtaAGATCTCTATTAAATAAGAAATTGTGCTTTCTAAATAAACTTTACCTTACCTTACTTCTTAAACCTTACTTCTCtttatacttttaaaacatctagagctgtattatttacatttattaaaacagataaaccaaaagtgatttaaaatatgaatcctggccaaacaataaacaaatttaaaagtTCAGTAACCGATCCAGAGAACTAGGGATGTCCCAATCACATTAGTTTGTCCCCTGAGCCGATGTCATTTaattttgagtatcttttgaTACCGAGTGCCCATCAATAGAAAAAAAGCAAGAACACATCCAAGTTGTcccttaaagttttttttcaatgATTATTGAAACAACAGTATCAAAATAGCcc
>TU254806
TAATTACTCGCTGTGTGAggagctgtgctgctgctgctgtaggaGGGAGATGGACTCCAGCAGGGTGATGGAGTATCTGATGGAGGTAGAAGTGGCAGCTGAAGACGTGCTCGCTGATAAACAGCAGATTGTAGACCTTGACGCAAGAAGGAACAGAAATCGAGAAGCGATGAATGCTCCCGAAATAGTGCTGACAGTGATAAAGTAAAAGTCTGCTTTGGAAACATGTTCATAAAATTCCCCAAGGAGAATGCTCAAGCCATGATGCAGAAAGG
>XM_022682329.1
CAGACTGGGGGACTTATTTTGTATAATTACTCGCTGTGTGAggagctgtgctgctgctgctgtaggaGGGAGATGGACTCCAGCAGGGTGATGGAGTATCTGATGGAGGTAGAAGTGGCAGCTGAAGACGTGCTCGCTGATAAACAGCAGATTGTAGACCTTGACGCAAGAAGGAACAGAAATCGAGAAGCGATGAATGCCCGAAATAGTGCTGACAGTGATAAAGTAAAAGTCTGCTTTGGAAACATGTTCATAAAATTCCCCAAGGAGAATGCTCAAGCCATGATGCAGAAAGATCAGGAACAGCTTGACCAAGAGATAACTGACCTCAGGAAACGTCTAAAAGCGAAAGTAAATCATCTCAATGACTTACAAGGAAAGCCTGAACTCAGGGGCTACAACCTCTCTCCACTTAGCAATGATGAACTGAAAGCAGTTAATAGCATCCTGAAGAGATAGGATGACTCGAGACAATGGTGCAGTCCAGAGACTTGAATTTCAGGTGAAAACCTGATGCCAGACCCATGTTTAAACTTGAGTGTGCAATTAGGGGGAGTGTGGGGGAACATATGAAGTCAAGTGAACTCTAAAATCAAGCAGGAGGAAGATTTTTCTACAAACAGCATGAGGACATTTTGTTCAGATATgcaataatacacacacaagtgGACTACAGCGATACACCTATTGACACACATACTTATAAAATCTAGAGTtttgagtgtgttgagtgtgtaagtgttaagTTCGGCTAATgtgtgatttaaaaatataacatttttattgtaaatgtttaattaagtaAGATCTCTATTAAATAAGAAATTGTGCTTTCTAAATAAACTTTACCTTACCTTACTTCTTAAACCTTACTTCTCtttatacttttaaaacatctagagctgtattatttacatttattaaaacagataaaccaaaagtgatttaaaatatgaatcctggccaaacaataaacaaatttaaaagtTCAGTAACCGATCCAGAGAACTAGGGATGTCCCAATCACATTAGTTTGTCCCCTGAGCCGATGTCATTTaattttgagtatcttttgaTACCGAGTGCCCATCAATAGAAAAAAAGCAAGAACACATCCAAGTTGTcccttaaagttttttttcaatgATTATTGAAACAACAGTATCAAAATAGCccaagtatttttttctctcacaaaataaacttttaaatgtA

Function

symbol description
pdrg1 Predicted to enable unfolded protein binding activity. Predicted to act upstream of or within protein folding. Predicted to be located in cytoplasm. Predicted to be part of prefoldin complex. Orthologous to human PDRG1 (p53 and DNA damage regulated 1).

NR:

description
p53 and DNA damage-regulated protein 1

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0016272 prefoldin complex cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254804 False 1155 lncRNA 0.38 5 7188655 7193229
TU254806 False 275 lncRNA 0.47 3 7190056 7193229
XM_022682329.1 True 1215 mRNA 0.37 6 7188616 7193252

Neighbor

gene id symbol gene type direction distance location
hp1bp3 hp1bp3 coding downstream 122530 7053226 ~ 7066086 (-)
sh2d5 sh2d5 coding downstream 138315 7033104 ~ 7050301 (-)
kif17 kif17,LOC108438632 coding downstream 157589 7007447 ~ 7031027 (-)
sox13 sox13 coding downstream 239662 6897991 ~ 6948954 (-)
LOC103022878 NA coding downstream 359905 6812408 ~ 6828711 (-)
LOC103037403 NA coding upstream 3948 7197200 ~ 7205391 (-)
LOC103036072 phactr3,LOC108254891 coding upstream 36221 7229473 ~ 7343221 (-)
LOC103035242 NA coding upstream 183307 7376559 ~ 7378591 (-)
LOC103034269 LOC108438618,LOC108414439 coding upstream 240892 7434144 ~ 7455982 (-)
LOC103022868 rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898 coding upstream 928485 8121737 ~ 8139529 (-)
G187881 NA non-coding downstream 164 7188078 ~ 7188452 (-)
G187880 NA non-coding downstream 578 7187790 ~ 7188038 (-)
G187878 NA non-coding downstream 4563 7183826 ~ 7184053 (-)
G187875 NA non-coding downstream 33267 7153083 ~ 7155349 (-)
LOC111195364 NA non-coding downstream 57837 7106200 ~ 7130779 (-)
G187928 NA non-coding upstream 37870 7231122 ~ 7231844 (-)
G187933 acot8,LOC107730625,LOC107670930 non-coding upstream 156759 7350011 ~ 7353303 (-)
G187931 srsf6,LOC107654800,LOC107722005,LOC103156038,LOC108254894 non-coding upstream 160995 7354247 ~ 7361214 (-)
G187965 NA non-coding upstream 264526 7457778 ~ 7460141 (-)
G187968 NA non-coding upstream 272470 7465722 ~ 7465984 (-)
LOC111195363 snrpe other downstream 205776 6977651 ~ 6982840 (-)
svbp svbp other downstream 1665695 5518793 ~ 5522921 (-)
phf13 phf13 other downstream 1682869 5493412 ~ 5505747 (-)
vamp3 vamp3,LOC107582408,LOC107751179 other downstream 2199358 4974228 ~ 4989258 (-)
LOC103030666 kcnab2a,LOC108431628,LOC107712982,LOC107657983,LOC107582417,LOC107592856,LOC108255041,LOC103385628,LOC101463812,LOC108231619,LOC107385277,LOC106513833,LOC100709904 other downstream 3027662 3970934 ~ 4160954 (-)
G187946 mybl2,mybl2b other upstream 195145 7388397 ~ 7391026 (-)
ghrh ghrh,LOC103034597,LOC108438619 other upstream 215870 7409122 ~ 7419806 (-)
LOC111195437 NA other upstream 2757832 9951084 ~ 9956317 (-)
G188898 NA other upstream 3797565 10990817 ~ 10991394 (-)
G189055 NA other upstream 4850661 12043913 ~ 12044293 (-)

Expression


Co-expression Network