G188213


Basic Information

Item Value
gene id G188213
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 9027548 ~ 9027859 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU255241
tttaagttttatataattgacgggcagcaccagacgctgacaatgtgctttatttttcagatataatagcaaagtgaaataaaataaatttatgtttgtcaaagttattttctcttttaatttttcttttcaaaaactgcagctattgactgagaataagcatctgttgaaattcttaaacagcagaatgcctgtgtctgctatattaagctataagtctgtgtaccgaacataaatataaatccttataactgacagaaataaatatgactaataataatttatagttactgtgcagatttttgggaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255241 True 312 lncRNA 0.29 1 9027548 9027859

Neighbor

gene id symbol gene type direction distance location
LOC103024232 arhgef10la,LOC108438575,LOC107695083,LOC106565901 coding upstream 294423 8438713 ~ 8733125 (+)
LOC103046266 chd5,LOC107555845,LOC107691315 coding upstream 596486 8346072 ~ 8431062 (+)
LOC103047485 rpl22,LOC103047485,LOC108414460,LOC107737211,LOC107555851 coding upstream 684201 8332182 ~ 8343347 (+)
LOC103024538 draxin,LOC108413332,LOC106565906 coding upstream 782551 8193011 ~ 8244997 (+)
pank4 pank4,LOC107742899 coding upstream 852378 8141553 ~ 8175170 (+)
klhdc7a LOC108438577 coding downstream 808240 9836099 ~ 9839322 (+)
dhrs3 dhrs3,LOC108439496,LOC107555693,LOC107685629,LOC107749419,LOC107703071,LOC103042050,LOC106582983 coding downstream 996133 10023992 ~ 10041141 (+)
LOC103039471 NA coding downstream 1092174 10120033 ~ 10132709 (+)
LOC111195373 NA coding downstream 1149271 10177130 ~ 10180602 (+)
LOC111195374 NA coding downstream 1186500 10214359 ~ 10214948 (+)
G188206 NA non-coding upstream 6653 9020635 ~ 9020895 (+)
G188188 NA non-coding upstream 83926 8882968 ~ 8943622 (+)
G188191 NA non-coding upstream 97239 8929823 ~ 8930309 (+)
G188186 NA non-coding upstream 135781 8855506 ~ 8891767 (+)
G188185 NA non-coding upstream 177981 8849306 ~ 8849567 (+)
G188219 NA non-coding downstream 97317 9125176 ~ 9125534 (+)
G188221 NA non-coding downstream 108411 9136270 ~ 9136618 (+)
G188222 NA non-coding downstream 145531 9173390 ~ 9173660 (+)
LOC111195368 NA non-coding downstream 724872 9752731 ~ 9754611 (+)
G188316 NA non-coding downstream 802100 9829959 ~ 9830176 (+)
agtrap agtrap other upstream 755836 8256796 ~ 8271712 (+)
LOC111195452 NA other upstream 914306 8112003 ~ 8113242 (+)
trnaq-uug_4 NA other upstream 1835322 7192154 ~ 7192226 (+)
LOC103029365 NA other upstream 1928876 7077165 ~ 7098672 (+)
p3h1 NA other upstream 3228569 5779891 ~ 5798979 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other downstream 255936 9283795 ~ 9819955 (+)
G188325 NA other downstream 826448 9854307 ~ 9856995 (+)
LOC111195371 NA other downstream 1073896 10101755 ~ 10106530 (+)
G188624 NA other downstream 1275501 10303360 ~ 10303665 (+)
G188771 NA other downstream 1820212 10848071 ~ 10852736 (+)

Expression


Co-expression Network