G188221


Basic Information

Item Value
gene id G188221
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 9136270 ~ 9136618 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU255250
ACTGTAGTATCTTGAGCTGTGATGCCatgtagatgcatgaaataagtcttcgctgatactgttctttgtatataagaaaatttattacagaaaaaaaagaataattagtaCAAAAGATAACAGCATCATTAACAAGCAAACCGGTTTTGCTTGGAGAGAGGTTCCCAAATCTGATCCCAAGCTCTCTCCTTTTCCCTTTGCGTTCAAGGGCTTTTATACCTCAGACCACAGCATATCACATTTCTTTACCATAAAAGGACATGTATATGTTTCAGGCAAAGTAAAAGTAGGAAACAGATGTGGGGTGTTCTTGGCTCTTAGCCCACATTCCAACATCTCTCAGGACCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255250 True 349 lncRNA 0.38 1 9136270 9136618

Neighbor

gene id symbol gene type direction distance location
LOC103024232 arhgef10la,LOC108438575,LOC107695083,LOC106565901 coding upstream 403145 8438713 ~ 8733125 (+)
LOC103046266 chd5,LOC107555845,LOC107691315 coding upstream 705208 8346072 ~ 8431062 (+)
LOC103047485 rpl22,LOC103047485,LOC108414460,LOC107737211,LOC107555851 coding upstream 792923 8332182 ~ 8343347 (+)
LOC103024538 draxin,LOC108413332,LOC106565906 coding upstream 891273 8193011 ~ 8244997 (+)
pank4 pank4,LOC107742899 coding upstream 961100 8141553 ~ 8175170 (+)
klhdc7a LOC108438577 coding downstream 699481 9836099 ~ 9839322 (+)
dhrs3 dhrs3,LOC108439496,LOC107555693,LOC107685629,LOC107749419,LOC107703071,LOC103042050,LOC106582983 coding downstream 887374 10023992 ~ 10041141 (+)
LOC103039471 NA coding downstream 983415 10120033 ~ 10132709 (+)
LOC111195373 NA coding downstream 1040512 10177130 ~ 10180602 (+)
LOC111195374 NA coding downstream 1077741 10214359 ~ 10214948 (+)
G188219 NA non-coding upstream 10736 9125176 ~ 9125534 (+)
G188213 NA non-coding upstream 108411 9027548 ~ 9027859 (+)
G188206 NA non-coding upstream 115375 9020635 ~ 9020895 (+)
G188188 NA non-coding upstream 192648 8882968 ~ 8943622 (+)
G188191 NA non-coding upstream 205961 8929823 ~ 8930309 (+)
G188222 NA non-coding downstream 36772 9173390 ~ 9173660 (+)
LOC111195368 NA non-coding downstream 616113 9752731 ~ 9754611 (+)
G188316 NA non-coding downstream 693341 9829959 ~ 9830176 (+)
G188349 NA non-coding downstream 782311 9918929 ~ 9981569 (+)
G188355 NA non-coding downstream 816030 9952648 ~ 9955821 (+)
agtrap agtrap other upstream 864558 8256796 ~ 8271712 (+)
LOC111195452 NA other upstream 1023028 8112003 ~ 8113242 (+)
trnaq-uug_4 NA other upstream 1944044 7192154 ~ 7192226 (+)
LOC103029365 NA other upstream 2037598 7077165 ~ 7098672 (+)
p3h1 NA other upstream 3337291 5779891 ~ 5798979 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other downstream 147177 9283795 ~ 9819955 (+)
G188325 NA other downstream 717689 9854307 ~ 9856995 (+)
LOC111195371 NA other downstream 965137 10101755 ~ 10106530 (+)
G188624 NA other downstream 1166742 10303360 ~ 10303665 (+)
G188771 NA other downstream 1711453 10848071 ~ 10852736 (+)

Expression


Co-expression Network