LOC111195368


Basic Information

Item Value
gene id LOC111195368
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 9752731 ~ 9754611 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU255297
TTTGGCAGGATAAccgcgaacctggcaactctggggAAAAGCGTTCTGTGATTGGACTGCAAGAGCAGAAGATTTAGACAAACAAGTATCAGCAGTTACAGCGATAGGGCGGGACTATGCTTTGGATGATGTTCGGAGAAAAGACGCTAAAATTGTCTCTCAGATTGAATGAATCGAATGAAATATACAGGTTATGGTTTGCGCTCGTTGCTTGGACGGAGGGACCAATGCAGTGAGCACTGTGTCAACCAGCTGGATAACTGACTCTGACCCAACAGAAACCTCCCCGCAGTCCTTCTAAAGTTATCTGGCAAGGTGAAACTGGGGAAGGAAGGCACCATCACTGTCTTAGCCCATTGTTGGAAGACTGCAAAAGCACAAGCTACAGCCAGTGGGACGGCACGAGTGCTACTGATGGAACTCTTTAATGTTGATGTTTTTCTGAACTTTAAGCatacctttatctgtttttgtattatacatatagtagtatatggtagtatatatTCTTGAATTTATAGTGAAGtgtattgttaaatatataataaaataaattgtgataTGT
>XR_002651600.1
catttttaaaatcattttaaataattgcaagaaaaaaaagcattagctATGGTCAGTGTGAGTGAATCACCACATACAACAGTTCCTGTAAATGTGCTGTCTCAGTTGTAACCTGCTGAAAATACCCTCCCTCTCCTTAAATCATAATTGTTACATTTTCAGTTTGAAGATTGTACCTGTGGTTTTCAGACAAGCCAAATTTGGCAGGATAAccgcgaacctggcaactctggggAAAAGCGTTCTGTGATTGGACTGCAAGAGCAGAAGATTTAGACAAACAAGTATCAGCAGTTACAGCGATAGGGCGGGACTATGCTTTGGATGATGTTCGGAGAAAAGACGCTAAAATTGTCTCTCAGATTGAATGAATCGAATGAAATATACAGGTTATGGTTTGCGCTCGTTGCTTGGACGGAGGGACCAATGCAGTGAGCACTGTGTCAACCAGCTGGATAACTGACTCTGACCCAACAGAAACCTCCCCGCAGTCCTTCTAAAGTTATCTGGCAAGGTGAAACTGGGGAAGGAAGGCACCATCACTGTCTTAGCCCATTGTTGGAAGACTGCAAAAGCACAAGCTACAGCCAGTGGGACGGCACGAGTGCTACTGATGGAACTCTTTAATGTTGATGTTTTTCTGAACTTTAAGCatacctttatctgtttttgtattatacatatagtagtatatggtagtatatatTCTTGAATTTATAGTGAAGtgtattgttaaatatataataaaataaattgtgataTGTGTGGTAATAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255297 False 565 lncRNA 0.41 2 9752930 9754600
XR_002651600.1 True 775 lncRNA 0.39 2 9752731 9754611

Neighbor

gene id symbol gene type direction distance location
LOC103024232 arhgef10la,LOC108438575,LOC107695083,LOC106565901 coding upstream 1019606 8438713 ~ 8733125 (+)
LOC103046266 chd5,LOC107555845,LOC107691315 coding upstream 1321669 8346072 ~ 8431062 (+)
LOC103047485 rpl22,LOC103047485,LOC108414460,LOC107737211,LOC107555851 coding upstream 1409384 8332182 ~ 8343347 (+)
LOC103024538 draxin,LOC108413332,LOC106565906 coding upstream 1507734 8193011 ~ 8244997 (+)
pank4 pank4,LOC107742899 coding upstream 1577561 8141553 ~ 8175170 (+)
klhdc7a LOC108438577 coding downstream 81488 9836099 ~ 9839322 (+)
dhrs3 dhrs3,LOC108439496,LOC107555693,LOC107685629,LOC107749419,LOC107703071,LOC103042050,LOC106582983 coding downstream 269381 10023992 ~ 10041141 (+)
LOC103039471 NA coding downstream 365422 10120033 ~ 10132709 (+)
LOC111195373 NA coding downstream 422519 10177130 ~ 10180602 (+)
LOC111195374 NA coding downstream 459748 10214359 ~ 10214948 (+)
G188222 NA non-coding upstream 579071 9173390 ~ 9173660 (+)
G188221 NA non-coding upstream 616113 9136270 ~ 9136618 (+)
G188219 NA non-coding upstream 627197 9125176 ~ 9125534 (+)
G188213 NA non-coding upstream 724872 9027548 ~ 9027859 (+)
G188206 NA non-coding upstream 731836 9020635 ~ 9020895 (+)
G188316 NA non-coding downstream 75348 9829959 ~ 9830176 (+)
G188349 NA non-coding downstream 164318 9918929 ~ 9981569 (+)
G188355 NA non-coding downstream 198037 9952648 ~ 9955821 (+)
G188356 NA non-coding downstream 198989 9953600 ~ 9956589 (+)
G188358 NA non-coding downstream 209918 9964529 ~ 9971293 (+)
agtrap agtrap other upstream 1481019 8256796 ~ 8271712 (+)
LOC111195452 NA other upstream 1639489 8112003 ~ 8113242 (+)
trnaq-uug_4 NA other upstream 2560505 7192154 ~ 7192226 (+)
LOC103029365 NA other upstream 2654059 7077165 ~ 7098672 (+)
p3h1 NA other upstream 3953752 5779891 ~ 5798979 (+)
G188325 NA other downstream 99696 9854307 ~ 9856995 (+)
LOC111195371 NA other downstream 347144 10101755 ~ 10106530 (+)
G188624 NA other downstream 548749 10303360 ~ 10303665 (+)
G188771 NA other downstream 1093460 10848071 ~ 10852736 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other downstream 1335117 11089728 ~ 11090047 (+)

Expression


Co-expression Network