G188325


Basic Information

Item Value
gene id G188325
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 9854307 ~ 9856995 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU255362
AACCATCCATACAAAcacaaaatccaaactaaaaaaCATAGGACATAATTAGGAATTATTCAATGCACCAAACGTCTCCCTTTCTTAGCATGTATATCTCACCAAGCCACATTTTTCCTTTCAATGTTCCTGTTTTTATttcccttcttttttttctctctctctcctctatctGCCTTCAACTCTATTTAACCCTTCCtgtattttttctcattatcaACCTCTCTCTTGCTACTATCATATACCCCAGATCTCACAGATGTATCTCTGCCCATatacacagcacaacacactacacGAACAAACCATACCATTGATAAACACTAAAAATCAAGGCTTCATAACATGTCTTCACTCAAGTTTGTAACCTGGAACATTCGTGGTATAGGCACACAGAGTAAACAGACAAAGGTATTACACCATCTCACTACACTGAAAGCAGATATCTGTCTACTACAAGAAACTCATCTATCTGAAACAAATCATCACAAACTAAAATCACTACACTATAATCATGTATTCTCAGCCTACTATAATTCTAAACAAAGAGGCGTATCCATtcttatacataaaaaaatcccCTACACACATAACACCACACTATCAGACCCAGAAGGAagatatattataatagacaTTAACATCAGTAACACCCCCTTAACAATTGCAAGCATATACGGACCAAATACTGATGACCCATCTTTTTTCCATAAGCTCTTCAACCAGATATCCAACATCTCTGATTCCACAATCATAATTGGAGGTGACTTCAATACAGTAATCAACCCAGACTTAGATAGACTTACCAGTACACACAACACACGTCAATGGCAATCCTCAGACACCATTAAACAATACATGGCAGACCTAGGGCTCAGTGATGGTTGGCGCCTCAAAAACCCAGCATCCAAAGAATTCTCTTTTCACTCACCAGTTCACCACTCTCACTCCCGCATTGACTTCTTCCTAACCAGCAATTCTATCAAAAGAGTGGGCATCCTTCCTGAAAATAAATGACTCTCCAGAAACCCCCCCGACTCTACTATGGGAAACTGGGAAAGCTGTATTACGAGGCAAAATCATCTCATACTCCGCttacaagaaaaagaaagatacaaAAAACGAGACCAACCTACAACGGAAAATTAAGGAACTAtctaatgaaataataaaaaacccaacagaaaaaaataagaaggagCTGAGCGAATGTAAATCACAATATAATGAACTCATAAACAAGAAGACTCAGTTTCTAATACAACAACTCAGGTATGAACATTTTGAACACAATAACAAGTCTGGAAAATTCTTAGCTAACCaagtaaaacacaataaagaaaaaacaaaaatcccaGCAATCAAAGACGAGGTCGGAAAAATTAGACAAACACCAgaagaaataaatcaaatatttagAAACTTCTATAAATCTCTATACTCATCAGACCATGAAACAGACCTTGCAGATAtccacaattttctcaataacatAAAGCTACCAAAATTAACTGAAGAACAAAAAAGCATATTAGAAAAACCGTTAACATCAAAAGAACTCCATAATGCACTCTGTCAAATGTCTAATAATAAAGCACCTGGACCAGATGGCTTTCCCACTGAATTCTATAAACACTTCTGGACAATACTCTCTCCAATATTCAGTAGATTGATCAcggaaataaaacacaaaaagagaTTATCAACAGAAATGAATACGGCAACAATTTCACTTCATCTCAAAGCTAATAAAGACCCCACCTTACCCTCCAGTTACCGCCCACTATCACTCATCAACACAGACACAAAGATCATAAGTAAGGCCCTAGCCACCAGATTGGAAAAAGTTATCCCATCACTTATACATCCTGATCAGACCGGCTTCATTAAAGGAAGACACTCCACTACCAACATGCGCAGACTACTTAATCTGATacaccacacaacactacaTCAGCTAGAGACAGCAATAGTTACATTAGACGCAGAGAAAGCCTTTGATAAAGTCAATTGGAAattcctcttcactactttacataAATTAGGTTTCGGAGAATCATTTATCGACTGGATTAAAACACTTTACACTTCACCCAAGGCCACAGTCAATACTAATGGACTAATATCACAGAATTTCACTTTGCACAGAGGTACCAGGCAAGGATGCCCCCTCTCCCCCCTCCTATTCTCAATTTTCATAgaaccactagcagcagctTTACGACAAAGCCCAAATATCAGAGGGATCCGGACCAACACCACAGAACACAAAATCAGCCTGTATGCAGACGATATTCTATTGTTCCTACAAAACCCACTCTCTTCAATTCCTCAAACTATacaaataattgaaaaattctccaaaatttcaGATTACTCCATTAACTGGACCAAATCCACCATTCTACCATTTAATATGAACCTATCAGATACAGTAACTCAGTCTCTACCTATCCCTATGTGCACGCAACACATCACATACCTAGGCATCAAAGTTTCCACCAAGCTATCCGAGCTCCACACACTTAACTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255362 True 2534 TUCP 0.38 2 9854307 9856995

Neighbor

gene id symbol gene type direction distance location
klhdc7a LOC108438577 coding upstream 14985 9836099 ~ 9839322 (+)
LOC103024232 arhgef10la,LOC108438575,LOC107695083,LOC106565901 coding upstream 1121182 8438713 ~ 8733125 (+)
LOC103046266 chd5,LOC107555845,LOC107691315 coding upstream 1423245 8346072 ~ 8431062 (+)
LOC103047485 rpl22,LOC103047485,LOC108414460,LOC107737211,LOC107555851 coding upstream 1510960 8332182 ~ 8343347 (+)
LOC103024538 draxin,LOC108413332,LOC106565906 coding upstream 1609310 8193011 ~ 8244997 (+)
dhrs3 dhrs3,LOC108439496,LOC107555693,LOC107685629,LOC107749419,LOC107703071,LOC103042050,LOC106582983 coding downstream 166997 10023992 ~ 10041141 (+)
LOC103039471 NA coding downstream 263038 10120033 ~ 10132709 (+)
LOC111195373 NA coding downstream 320135 10177130 ~ 10180602 (+)
LOC111195374 NA coding downstream 357364 10214359 ~ 10214948 (+)
LOC111195375 NA coding downstream 363547 10220542 ~ 10221130 (+)
G188316 NA non-coding upstream 24131 9829959 ~ 9830176 (+)
LOC111195368 NA non-coding upstream 99696 9752731 ~ 9754611 (+)
G188222 NA non-coding upstream 680647 9173390 ~ 9173660 (+)
G188221 NA non-coding upstream 717689 9136270 ~ 9136618 (+)
G188219 NA non-coding upstream 728773 9125176 ~ 9125534 (+)
G188349 NA non-coding downstream 61934 9918929 ~ 9981569 (+)
G188355 NA non-coding downstream 95653 9952648 ~ 9955821 (+)
G188356 NA non-coding downstream 96605 9953600 ~ 9956589 (+)
G188358 NA non-coding downstream 107534 9964529 ~ 9971293 (+)
G188366 NA non-coding downstream 208743 10065738 ~ 10066423 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other upstream 34352 9283795 ~ 9819955 (+)
agtrap agtrap other upstream 1582595 8256796 ~ 8271712 (+)
LOC111195452 NA other upstream 1741065 8112003 ~ 8113242 (+)
trnaq-uug_4 NA other upstream 2662081 7192154 ~ 7192226 (+)
LOC103029365 NA other upstream 2755635 7077165 ~ 7098672 (+)
LOC111195371 NA other downstream 244760 10101755 ~ 10106530 (+)
G188624 NA other downstream 446365 10303360 ~ 10303665 (+)
G188771 NA other downstream 991076 10848071 ~ 10852736 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other downstream 1232733 11089728 ~ 11090047 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other downstream 1594384 11451379 ~ 11464480 (+)

Expression


Co-expression Network