LOC111195371


Basic Information

Item Value
gene id LOC111195371
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 10101755 ~ 10106530 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU255566
cattttattgcataaaataagtatttgatcatCTACCAACCAGCAAGAATTCTGTCTTTAACAGACCTGCACCCTTTTCTTTACTAAGTTTCTCCTATTCTGACTTTTTCTGGCTGTGTTTGAAGGTCCTGGAGTGTCCTACCTagacctgaacccaatagaAAATCTTCGGCAGGTGAAACTCAATGTTACCCAGCAACAGCCCTGAAACCTGAAAGATTTGGAGAAGATCTGTATTGAGGAGTGAACCAAAATCCCTTCTACAGCGTGAAGTCTAAACTTGACCTCTGTAATTGCCAGAATTCTTGCTGTACAATCGTGGACGTGTAGGTTCTACCTGGCGACGGAGCAAAAAGTGGGTACTAGGAATTCTTGAAGTGGGCGTTACCACCCGGAAGCCCATACTGAAAATCGTCTCCAAGAGGTCGAGTGCACAGATGCTACCTGTTGTGAGACACTATGTGAGAAGAGGCACCAGTATCATTACTGATGAGTGGCGAGCGTACAGAGGTCTTTCAGATCTTGGATATGACCACCATACTGTTTGCCACAAGAGACATTTTGTACATCCACTCACTAGGGCTCACACCCAGCACCTGGAGAGGGCTTGGCAAAAATTCAAGGTTGATGTGTGGCGACACAGAGCAAACCGAAACACAAAACTCCTGAAACAGTACCTGAAGATTATAGAATGGGAACACTGGCTCGCCAAGAAGCACAAATGGGGTATACTGGGAAGACTGCTCCATGACattagaaaaatgtataaaagccATTCTTAATTAAATAGTCCAGAGGAGCATTCAGAATAGTGGATCTTAGCATCTGCAGTcattaaatgcaaaaatacataatctgtattaatatgttttaatattggcACATAGTTTGACAGTGTGTTCAaggatatttttaataatagagGCAAATATGTCCAGCTAATTTCCATCcatgtaatttaatattttggtcACGTACGTTATGGTTATGGCAATATATAAATAGTACTGAAATTCAGATTTACACTTTTCTGACTCTAAATCAATTActgataaaaacagaaaatgtaaaatattaatggTTTTGGGTTATATGTTTGTAAACTCGCATCTTTTTTGTATACATCCATTAAGTAGATTTGATGTAAAATGTATGCATTGTTAATAAATGC
>XM_022682361.1
TGggtgagctgatgctggagttacagctagagcatgtttaaaacgtttaaaagctttaaaaatgtatgccCGCAATACTAAAACATCTGATATGGTTTTGTGTTGAGAAAATTAGAAGATATTAGAGGAGAAGAAATTCTcaagtgggtattctcctctctagagATTCTCTGCTTACAGTTCTTTGCTGCATCACATGACTACAGCTCCTCCTTTCAAGCTAAACGCGGGACGCGTTTCTGGACAGAAGCAAACTGAGGCTGTGGTAATAGTACGCAGGGTAAAATGACATTAATTCAAAGAGAAATTCTTGGATTATTAAGAGGCAGGGATAATCTTCGAAACAGATGTAAGATTGTGCGATGGATGCAGAAAAAATAATTCTGCCCAGAGCAATGAAATGCAACTCatgcaagaaaaaaatgaagttacACAAACGGTTCCAAGGAGATGGATATCAGTGGTGTTGCACAAGGAATGCACATCACCATACAGACATTACGGCTTCTGTCCGGAAGGGGTCTATGTTTTTTCGCTCCCGTTTATCTCTGCGACAACACTTAGAGTTCATCTATAGATTTTCTCAGGGcctgagacagagacagatggaGCTTATTGAGGATGGGATAGCTGGCAGTAGCAGAACTCTGACCAAAATGACATCAGCTTTGAGAAAAGTCTGCATTTCAGCGATGACAAAACTTCGACAGCGTGGAGGGATGCGTGTTGGGGGCCCACACCACTTTGTGATGATAGATGAGAGTAAATTCTCACACAAAAGAAAGTACAATCGTGGACGTGTAGGTTCTACCTGGCGACGGAGCAAAAAGTGGGTACTAGGAATTCTTGAAGTGGGCGTTACCACCCGGAAGCCCATACTGAAAATCGTCTCCAAGAGGTCGAGTGCACAGATGCTACCTGTTGTGAGACACTATGTGAGAAGAGGCACCAGTATCATTACTGATGAGTGGCGAGCGTACAGAGGTCTTTCAGATCTTGGATATGACCACCATACTGTTTGCCACAAGAGACATTTTGTACATCCACTCACTAGGGCTCACACCCAGCACCTGGAGAGGGCTTGGCAAAAATTCAAGGTTGATGTGTGGCGACACAGAGCAAACCGAAACACAAAACTCCTGAAACAGTACCTGAAGATTATAGAATGGGAACACTGGCTCGCCAAGAAGCACAAATGGGGTATACTGGGAAGACTGCTCCATGACattagaaaaatgtataaaagccATTCTTAATTAAATAGTCCAGAGGAGCATTCAGAATAGTGGATCTTAGCATCTGCAGTcattaaatgcaaaaatacataatctgtattaatatgttttaatattggcACATAGTTTGACAGTGTGTTCAaggatatttttaataatagagGCAAATATGTCCAGCTAATTTCCATCcatgtaatttaatattttggtcACGTACGTTATGGTTATGGCAATATATAAATAGTACTGAAATTCAGATTTACACTTTTCTGACTCTAAATCAATTActgataaaaacagaaaatgtaaaatattaatggTTTTGGGTTATATGTTTGTAAACTCGCATCTTTTTTGTATACATCCATTAAGTAGATTTGATGTAAAATGTATGCATTGTTAATAAATGCTACCCTGTTTAAAGTACAAACTAgtaattgtgtttttctgtttagacATTAATCATTATCGTGCTGTAAGGAAcatttatgaagctttataatttgttatatacCTTTGGTAATGTGGAAGAACTCATCACTTTACTTAAAGTCTGTAAAAAGTgcttatgaagctttataatttGTCATATGCCTTTGttaatgtggaataactcatCACTTTACTTAAAGTCTGTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255566 False 1171 TUCP 0.39 2 10104616 10106300
XM_022682361.1 True 1875 mRNA 0.39 5 10101755 10106530

Neighbor

gene id symbol gene type direction distance location
dhrs3 dhrs3,LOC108439496,LOC107555693,LOC107685629,LOC107749419,LOC107703071,LOC103042050,LOC106582983 coding upstream 60614 10023992 ~ 10041141 (+)
klhdc7a LOC108438577 coding upstream 262433 9836099 ~ 9839322 (+)
LOC103024232 arhgef10la,LOC108438575,LOC107695083,LOC106565901 coding upstream 1368630 8438713 ~ 8733125 (+)
LOC103046266 chd5,LOC107555845,LOC107691315 coding upstream 1670693 8346072 ~ 8431062 (+)
LOC103047485 rpl22,LOC103047485,LOC108414460,LOC107737211,LOC107555851 coding upstream 1758408 8332182 ~ 8343347 (+)
LOC103039471 NA coding downstream 13503 10120033 ~ 10132709 (+)
LOC111195373 NA coding downstream 70600 10177130 ~ 10180602 (+)
LOC111195374 NA coding downstream 107829 10214359 ~ 10214948 (+)
LOC111195375 NA coding downstream 114012 10220542 ~ 10221130 (+)
LOC103026179 asic1,asic1b,LOC107721241 coding downstream 369409 10475939 ~ 10963809 (+)
G188366 NA non-coding upstream 35332 10065738 ~ 10066423 (+)
G188349 NA non-coding upstream 120186 9918929 ~ 9981569 (+)
G188358 NA non-coding upstream 130462 9964529 ~ 9971293 (+)
G188356 NA non-coding upstream 145166 9953600 ~ 9956589 (+)
G188355 NA non-coding upstream 145934 9952648 ~ 9955821 (+)
G188527 NA non-coding downstream 121967 10228497 ~ 10229131 (+)
G188622 NA non-coding downstream 194638 10301168 ~ 10301380 (+)
G188623 NA non-coding downstream 195915 10302445 ~ 10302703 (+)
G188632 NA non-coding downstream 200856 10307386 ~ 10311022 (+)
G188639 NA non-coding downstream 216893 10323423 ~ 10323628 (+)
G188325 NA other upstream 244760 9854307 ~ 9856995 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other upstream 281800 9283795 ~ 9819955 (+)
agtrap agtrap other upstream 1830043 8256796 ~ 8271712 (+)
LOC111195452 NA other upstream 1988513 8112003 ~ 8113242 (+)
trnaq-uug_4 NA other upstream 2909529 7192154 ~ 7192226 (+)
G188624 NA other downstream 196830 10303360 ~ 10303665 (+)
G188771 NA other downstream 741541 10848071 ~ 10852736 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other downstream 983198 11089728 ~ 11090047 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other downstream 1344849 11451379 ~ 11464480 (+)
fam19a1 fam19a1,LOC108280984,LOC107729407,LOC106583036,LOC105017301,LOC107600286 other downstream 1584342 11690872 ~ 12000663 (+)

Expression


Co-expression Network