G188771


Basic Information

Item Value
gene id G188771
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 10848071 ~ 10852736 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU255903
actgacacgctgcgacataggagctcacactgtactgacacgctgcgacataggagctcacaCTGCACTGACACGCTGCAACATAGGAGCttacactgcactgacatgctgcgacataggagctcatactgtactgacacgctgcgacataggagctcatactgtactgacacgctgcgacataggagctcacactgcactgacacgctGCAACATTGGAGCTCATACTGTACTCACATGCTGCGACATAGGAGCTCATACTGTACTGACATGCTGCGACATAGGAactcacactgcactgacacgctgcgacatAGGAGCTCACACTGTAATTACAAGCTGCATCATAGGACCTCATACTGTACTGACACTCTGCAACATAGGAGCTCATACTGCACTGACACGCTGCAACATAGGAGCTCATACTGCACTGACACGCTGCAACATAGGAGCTCatactgtactgacacgctgcaacataggagctcatactgtactgacacgctgcgacataggagctcatactgtactgacacgctgcaacataggagctcatactgtactgacacgctgcgacataggagctcacactgcactgacacgctgcgacataggagctcacactgcactgacacgctgcgacataggagctcacactgcactgacatgctGCGACATAGGAGcttacactgcactgacacgctgcgacataggagctcacactgcactgacacgctgcaacataggagctcacac
>TU255904
gacataggagctcacactgcactgacacgctgcgacataggagctcacactgcactgacacgctgcgacataggagctcacactgcactgacacgctgcgacatagagctcacactgcactgaacacgctgcgacataggagctcatactgtactgacacgctgcggcataggagcttttactgtactgacacgctgcaacATAGGAGCTCATACTGTACTGACACGCAGCGACATAGAAGCTCacactgtactgacacgctgcgacataggagctcacactgtactgacacgctgcgacataggagctcatactgtactgacacgctgcgacataggagctcatactgtactgaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU255903 True 756 TUCP 0.52 4 10848071 10852736
TU255904 False 357 lncRNA 0.53 2 10848581 10849214

Neighbor

gene id symbol gene type direction distance location
LOC103041410 asic1b,LOC107569540 coding upstream 108396 10738054 ~ 10739675 (+)
LOC111195375 NA coding upstream 626941 10220542 ~ 10221130 (+)
LOC111195374 NA coding upstream 633123 10214359 ~ 10214948 (+)
LOC111195373 NA coding upstream 667469 10177130 ~ 10180602 (+)
LOC103039471 NA coding upstream 715362 10120033 ~ 10132709 (+)
slc25a26 slc25a26,LOC107753336,LOC107699790,LOC107753784,LOC107600283,LOC107656062 coding downstream 144603 10997339 ~ 11070355 (+)
kbtbd8 kbtbd8,LOC107600285,LOC107753780,LOC107656060,LOC107557775,LOC107729395 coding downstream 404422 11257158 ~ 11266360 (+)
LOC103022498 LOC108434863 coding downstream 420701 11273437 ~ 11303246 (+)
LOC111195454 NA coding downstream 706646 11559382 ~ 11562194 (+)
LOC103043048 rab7a,rab7,LOC106583206,LOC102230535,LOC108254780 coding downstream 1358009 12210745 ~ 12226480 (+)
G188763 NA non-coding upstream 53504 10792979 ~ 10794567 (+)
G188710 NA non-coding upstream 204091 10600268 ~ 10643980 (+)
G188716 NA non-coding upstream 235979 10609009 ~ 10612092 (+)
G188672 NA non-coding upstream 357827 10428468 ~ 10490244 (+)
G188650 NA non-coding upstream 507176 10340655 ~ 10340895 (+)
G188906 NA non-coding downstream 156679 11009415 ~ 11010628 (+)
G188907 NA non-coding downstream 173648 11026384 ~ 11026808 (+)
G188909 NA non-coding downstream 177793 11030529 ~ 11031324 (+)
G188912 NA non-coding downstream 201216 11053952 ~ 11054952 (+)
G188919 NA non-coding downstream 225907 11078643 ~ 11080971 (+)
G188624 NA other upstream 544406 10303360 ~ 10303665 (+)
LOC111195371 NA other upstream 741541 10101755 ~ 10106530 (+)
G188325 NA other upstream 991076 9854307 ~ 9856995 (+)
LOC103032765 igsf21,igsf21a,LOC108438574,LOC107749415,LOC107727841,LOC107685626 other upstream 1028116 9283795 ~ 9819955 (+)
agtrap agtrap other upstream 2576359 8256796 ~ 8271712 (+)
G188923 lrig1,LOC107557776,LOC107753782,LOC107600281 other downstream 236992 11089728 ~ 11090047 (+)
G188968 suclg2,LOC107753779,LOC107656059,LOC107729402,LOC107699794 other downstream 598643 11451379 ~ 11464480 (+)
fam19a1 fam19a1,LOC108280984,LOC107729407,LOC106583036,LOC105017301,LOC107600286 other downstream 838136 11690872 ~ 12000663 (+)
G189073 hmces other downstream 1378051 12230787 ~ 12236092 (+)
G189141 NA other downstream 1586867 12439603 ~ 12440733 (+)

Expression


Co-expression Network