G189052


Basic Information

Item Value
gene id G189052
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12008843 ~ 12009058 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256226
gggtgacataccagagttcaaaagaggacaaatttttggtgcacgtcttgctggagcatctgtgaccaagacagcaagtctttgtgatgcatcaagagccacggtatccagggtaatgtcagcataccaccaagaaggaccaaccacatccaactggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256226 True 216 lncRNA 0.49 1 12008843 12009058

Neighbor

gene id symbol gene type direction distance location
suclg2 suclg2,LOC107729402,LOC107753779,LOC107699794 coding downstream 474428 11372257 ~ 11534415 (-)
lrig1 lrig1,LOC107716980,LOC107557776 coding downstream 853098 11080123 ~ 11155745 (-)
LOC111195430 gria2,LOC108411138 coding downstream 1148945 10834016 ~ 10859898 (-)
lrrc38 lrrc38,LOC108439497,LOC107685631,LOC108281009,LOC107691331,LOC107555684,LOC107568719 coding downstream 1724929 10224975 ~ 10283914 (-)
LOC111195372 LOC108410896,LOC108414677,LOC108416243 coding downstream 1905950 10094323 ~ 10102893 (-)
fam19a4 fam19a4,fam19a4b,LOC107655986,LOC107600333,LOC107729393,LOC107696804,LOC107558879 coding upstream 48474 12057532 ~ 12115859 (-)
tmf1 tmf1 coding upstream 173061 12182119 ~ 12207582 (-)
hmces hmces coding upstream 221358 12230416 ~ 12236146 (-)
tada3 tada3,tada3l,LOC107656064,LOC106565817 coding upstream 227828 12236886 ~ 12244320 (-)
LOC103042309 LOC108435436,LOC108254777,LOC107677511,LOC104938990,LOC107574463,LOC107715804,LOC107551799 coding upstream 249736 12258794 ~ 12289011 (-)
LOC111195377 NA non-coding downstream 251734 11755397 ~ 11757109 (-)
G188994 NA non-coding downstream 548466 11460088 ~ 11460377 (-)
G188985 NA non-coding downstream 703390 11302749 ~ 11305453 (-)
G188976 NA non-coding downstream 742165 11264762 ~ 11266678 (-)
G188975 NA non-coding downstream 744253 11264039 ~ 11264590 (-)
G189053 NA non-coding upstream 29719 12038777 ~ 12039088 (-)
G189054 NA non-coding upstream 31517 12040575 ~ 12040855 (-)
G189085 rab7a,LOC107093905,LOC101061812,LOC106582926,LOC106518505 non-coding upstream 212232 12221290 ~ 12229525 (-)
G189159 NA non-coding upstream 318700 12327758 ~ 12328365 (-)
G189315 NA non-coding upstream 506883 12515941 ~ 12518663 (-)
G188898 NA other downstream 1017449 10990817 ~ 10991394 (-)
LOC111195437 NA other downstream 2052526 9951084 ~ 9956317 (-)
ghrh ghrh,LOC103034597,LOC108438619 other downstream 4589037 7409122 ~ 7419806 (-)
G187946 mybl2,mybl2b other downstream 4617817 7388397 ~ 7391026 (-)
pdrg1 pdrg1 other downstream 4815591 7188616 ~ 7193252 (-)
G189055 NA other upstream 34855 12043913 ~ 12044293 (-)
eogt eogt,LOC107729408 other upstream 151484 12160542 ~ 12178610 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other upstream 288991 12298049 ~ 12395532 (-)
LOC111195455 NA other upstream 603553 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other upstream 605854 12614912 ~ 12619566 (-)

Expression


Co-expression Network