G189055


Basic Information

Item Value
gene id G189055
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12043913 ~ 12044293 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256229
cacaacattatgggtgacataccagagttcaaaagaggacaaattgttggtgcacatcttgctggcgcatctgtgaccaagacagcaagtctttgtgatgcatcaagagccacggtctccagggtaatgtcagcataccaccaagaaggacgaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcaggtgctaacccggattgtattaaaaaaacataaaaccacggctgatcaaatcacggcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaccacaataaattattgtggtctaaaaccaggtgtttcagtttcattgtccaacccctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256229 True 381 TUCP 0.45 1 12043913 12044293

Neighbor

gene id symbol gene type direction distance location
suclg2 suclg2,LOC107729402,LOC107753779,LOC107699794 coding downstream 509498 11372257 ~ 11534415 (-)
lrig1 lrig1,LOC107716980,LOC107557776 coding downstream 888168 11080123 ~ 11155745 (-)
LOC111195430 gria2,LOC108411138 coding downstream 1184015 10834016 ~ 10859898 (-)
lrrc38 lrrc38,LOC108439497,LOC107685631,LOC108281009,LOC107691331,LOC107555684,LOC107568719 coding downstream 1759999 10224975 ~ 10283914 (-)
LOC111195372 LOC108410896,LOC108414677,LOC108416243 coding downstream 1941020 10094323 ~ 10102893 (-)
fam19a4 fam19a4,fam19a4b,LOC107655986,LOC107600333,LOC107729393,LOC107696804,LOC107558879 coding upstream 13239 12057532 ~ 12115859 (-)
tmf1 tmf1 coding upstream 137826 12182119 ~ 12207582 (-)
hmces hmces coding upstream 186123 12230416 ~ 12236146 (-)
tada3 tada3,tada3l,LOC107656064,LOC106565817 coding upstream 192593 12236886 ~ 12244320 (-)
LOC103042309 LOC108435436,LOC108254777,LOC107677511,LOC104938990,LOC107574463,LOC107715804,LOC107551799 coding upstream 214501 12258794 ~ 12289011 (-)
G189054 NA non-coding downstream 3058 12040575 ~ 12040855 (-)
G189053 NA non-coding downstream 4825 12038777 ~ 12039088 (-)
G189052 NA non-coding downstream 34855 12008843 ~ 12009058 (-)
LOC111195377 NA non-coding downstream 286804 11755397 ~ 11757109 (-)
G188994 NA non-coding downstream 583536 11460088 ~ 11460377 (-)
G189085 rab7a,LOC107093905,LOC101061812,LOC106582926,LOC106518505 non-coding upstream 176997 12221290 ~ 12229525 (-)
G189159 NA non-coding upstream 283465 12327758 ~ 12328365 (-)
G189315 NA non-coding upstream 471648 12515941 ~ 12518663 (-)
G189316 NA non-coding upstream 484277 12528570 ~ 12528851 (-)
G189317 usp48 non-coding upstream 484851 12529144 ~ 12533333 (-)
G188898 NA other downstream 1052519 10990817 ~ 10991394 (-)
LOC111195437 NA other downstream 2087596 9951084 ~ 9956317 (-)
ghrh ghrh,LOC103034597,LOC108438619 other downstream 4624107 7409122 ~ 7419806 (-)
G187946 mybl2,mybl2b other downstream 4652887 7388397 ~ 7391026 (-)
pdrg1 pdrg1 other downstream 4850661 7188616 ~ 7193252 (-)
eogt eogt,LOC107729408 other upstream 116249 12160542 ~ 12178610 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other upstream 253756 12298049 ~ 12395532 (-)
LOC111195455 NA other upstream 568318 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other upstream 570619 12614912 ~ 12619566 (-)
tsen2 NA other upstream 1018506 13062799 ~ 13076742 (-)

Expression


Co-expression Network