G189317 (usp48)


Basic Information

Item Value
gene id G189317
gene name usp48
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12529144 ~ 12533333 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256605
CTGCCCCGTATCAAGCCCCAGTGCTTTCACCAGACCCGAGGGATCGATGTATCGTCTGTTGCTGTTCTGCAGCAGTGCAAACAGGTACTGTAGGTGCTCACATATCGTCCTTGGTTCATAATCTGACTCTATGTTGTGCCCTTCAGCCCTGGAATTCTGACACATGTAGAGCATCCTGCGCAGCTCCAGGTTGTGGAACCACACCTGGAGGAAGGTGTTTACATAACACGTGGCACCAAGATTTGTCAGGCCCACAAAAGTGTTCTTGTCTCTTCGCTCAGAGTTTGGGTCATCAATGTTGTGGAAGGTATTTTCATCAATTTCCCCCAACCACAAATGTTCCCCGATTCCAACTAAACAGTTGGGGTTCCCTTTGCAGTTCCTCCGGCATGTTCCCCTTTTACATGCGGATACAGCGATCCTGTAAGCTAAGTCGATATGTTCCTGTGTGATGTCCTCTGGTCTCACTGAATCAACCCATCTCCAGGCAGCTTTTTCCAGCTGTATACGAGGAGCCATcCTGCGCTTGTTTTTGTGGTGAAGCCAGTGTTAGTGGAGCTGCTTTAATAACGGAACTGTTCACATTTTATTCGGGGGGTGTTTGTATTTAGCGCC
>TU256606
CTGCCCCGTATCAAGCCCCAGTGCTTTCACCAGACCCGAGGGATCGATGTATCGTCTGTTGCTGTTCTGCAGCAGTGCAAACAGGTACTGTAGGTGCTCACATATCGTCCTTGGTTCATAATCTGACTCTATGTTGTGCCCTTCAGCCCTGGAATTCTGACACATGTAGAGCATCCTGCGCAGCTCCAGGTTGTGGAACCACACCTGGAGGAAGGTGTTTACATAACACGTGGCACCAAGATTTGTCAGGCCCACAAAAGTGTTCTTGTCTCTTCGCTCAGAGTTTGGGTCATCAATGTTGTGGAAGGTATTTTCATCAATTTCCCCCAACCACAAATGTTCCCCGATTCCAACTAAACAGTTGGGGTTCCCTTTGCAGTTCCTCCGGCATGTTCCCCTTTTACATGCGGATACAGCGATCCTGTAAGCTAAGTCGATATGTTCCTGTGTGATGTCCTCTGGTCTCACTGAATCAACCCATCTCCAGGCAGCTTTTTCCAGCTGTATACGAGGAGCCATcCTAATGAAAAAACAGCAGTACTATCCCAGCT

Function

symbol description
usp48 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Predicted to be active in cytosol and nucleus. Orthologous to human USP48 (ubiquitin specific peptidase 48).

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 48

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256605 True 615 lncRNA 0.49 5 12529144 12533333
TU256606 False 551 lncRNA 0.49 5 12529464 12533333

Neighbor

gene id symbol gene type direction distance location
ldlrad2 ldlrad2 coding downstream 2565 12518881 ~ 12526579 (-)
chchd4 chchd4,chchd4a,LOC107574929,LOC107718204 coding downstream 16683 12508912 ~ 12512461 (-)
LOC103039006 dnah1 coding downstream 55601 12396596 ~ 12473543 (-)
LOC103042309 LOC108435436,LOC108254777,LOC107677511,LOC104938990,LOC107574463,LOC107715804,LOC107551799 coding downstream 240133 12258794 ~ 12289011 (-)
tada3 tada3,tada3l,LOC107656064,LOC106565817 coding downstream 284824 12236886 ~ 12244320 (-)
LOC103028365 LOC103028365,LOC108435392,LOC104949255 coding upstream 33538 12566871 ~ 12573087 (-)
atxn7l2 atxn7l2 coding upstream 40886 12574219 ~ 12592093 (-)
sypl2 NA coding upstream 61193 12594526 ~ 12612017 (-)
LOC103029205 LOC103029205,LOC108435351,LOC107659543,LOC107715787 coding upstream 129239 12662572 ~ 12666219 (-)
gpr61 gpr61,LOC108434964 coding upstream 140033 12673366 ~ 12687118 (-)
G189316 NA non-coding downstream 293 12528570 ~ 12528851 (-)
G189315 NA non-coding downstream 10481 12515941 ~ 12518663 (-)
G189159 NA non-coding downstream 200779 12327758 ~ 12328365 (-)
G189085 rab7a,LOC107093905,LOC101061812,LOC106582926,LOC106518505 non-coding downstream 299619 12221290 ~ 12229525 (-)
G189054 NA non-coding downstream 488289 12040575 ~ 12040855 (-)
G189319 usp48 non-coding upstream 4917 12538250 ~ 12540612 (-)
G189344 sort1 non-coding upstream 115978 12649311 ~ 12651090 (-)
G189345 sort1 non-coding upstream 119727 12653060 ~ 12658764 (-)
G189348 rrp9,LOC107659541 non-coding upstream 170935 12704268 ~ 12704712 (-)
G189349 NA non-coding upstream 176340 12709673 ~ 12711013 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 133612 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 350534 12160542 ~ 12178610 (-)
G189055 NA other downstream 484851 12043913 ~ 12044293 (-)
G188898 NA other downstream 1537750 10990817 ~ 10991394 (-)
LOC111195437 NA other downstream 2572827 9951084 ~ 9956317 (-)
LOC111195455 NA other upstream 79278 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other upstream 81579 12614912 ~ 12619566 (-)
tsen2 NA other upstream 529466 13062799 ~ 13076742 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 2785310 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 2875874 15409207 ~ 15466584 (-)

Expression


Co-expression Network