G189380


Basic Information

Item Value
gene id G189380
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12890834 ~ 12891269 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256703
ttattcatgtttaaaattaaatttctcatgattttcccataatgccaaaccaggtccactaccatttgaaagagtccatcctaggctatgactcctgcaaatttgggcaaatttcactgttttgtttattttatataattttttttttttttatgcttaaaatgacatttctcatgattttcccataatgccaacacagttccattaccatttgaaagagtctgtcctaggctttgactcctgcaag

Function

NR:

description
PREDICTED: toll-like receptor 9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256703 True 247 lncRNA 0.33 2 12890834 12891269

Neighbor

gene id symbol gene type direction distance location
LOC103025083 LOC108431510,LOC107586924,LOC107756006,LOC107593103,LOC107704447,LOC105893506 coding downstream 6052 12880822 ~ 12884782 (-)
ippk ippk,LOC107755999,LOC107658385 coding downstream 36441 12820875 ~ 12854393 (-)
LOC111195440 NA coding downstream 105649 12770735 ~ 12785185 (-)
LOC103030591 LOC108435310,LOC108281021,LOC107715788,LOC107659540,LOC107575639 coding downstream 134651 12714488 ~ 12756183 (-)
gpr61 gpr61,LOC108434964 coding downstream 203716 12673366 ~ 12687118 (-)
shisa5 NA coding upstream 14061 12905330 ~ 12922980 (-)
nuf2 nuf2 coding upstream 34787 12926056 ~ 12940460 (-)
LOC103034476 zgc:77375,LOC108431553,LOC108254961,LOC107700631,LOC107758152 coding upstream 61241 12952510 ~ 12972311 (-)
LOC103027102 isy1,LOC108431508,LOC108254962,LOC107700632 coding upstream 82671 12973940 ~ 12980817 (-)
LOC111195380 NA coding upstream 92152 12983421 ~ 12990268 (-)
G189376 NA non-coding downstream 10490 12879945 ~ 12880344 (-)
G189352 NA non-coding downstream 122123 12768010 ~ 12768711 (-)
G189349 NA non-coding downstream 179821 12709673 ~ 12711013 (-)
G189348 rrp9,LOC107659541 non-coding downstream 186122 12704268 ~ 12704712 (-)
G189345 sort1 non-coding downstream 232070 12653060 ~ 12658764 (-)
G189381 NA non-coding upstream 3594 12894863 ~ 12896608 (-)
G189385 NA non-coding upstream 11668 12902937 ~ 12903160 (-)
G189402 NA non-coding upstream 138901 13030170 ~ 13032240 (-)
G189404 NA non-coding upstream 159290 13050559 ~ 13053733 (-)
G189417 timp4 non-coding upstream 298509 13189778 ~ 13194807 (-)
LOC111195455 NA other downstream 176802 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 271268 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 495302 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 712224 12160542 ~ 12178610 (-)
G189055 NA other downstream 846541 12043913 ~ 12044293 (-)
tsen2 NA other upstream 171530 13062799 ~ 13076742 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 2427374 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 2517938 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 3454432 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 3678354 16569623 ~ 16599317 (-)

Expression


Co-expression Network