G189385


Basic Information

Item Value
gene id G189385
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 12902937 ~ 12903160 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256708
tttatttttgaggacagatctgcacactcttaatattttaatctttgtgtcttaatgagggagagtcacctggaatagtttctcAGTATCTTGAAGGAGTTCTGGGAAGTTCTGAACAATAGTTTCtcttttccttcactctgtgAAGCTGCAGCTCATCCAAAATCACCATCTCATatgggtttagatcaggggattaatgtggaggacaaacactattttgt

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256708 True 224 lncRNA 0.38 1 12902937 12903160

Neighbor

gene id symbol gene type direction distance location
LOC103025083 LOC108431510,LOC107586924,LOC107756006,LOC107593103,LOC107704447,LOC105893506 coding downstream 18155 12880822 ~ 12884782 (-)
ippk ippk,LOC107755999,LOC107658385 coding downstream 48544 12820875 ~ 12854393 (-)
LOC111195440 NA coding downstream 117752 12770735 ~ 12785185 (-)
LOC103030591 LOC108435310,LOC108281021,LOC107715788,LOC107659540,LOC107575639 coding downstream 146754 12714488 ~ 12756183 (-)
gpr61 gpr61,LOC108434964 coding downstream 215819 12673366 ~ 12687118 (-)
shisa5 NA coding upstream 2170 12905330 ~ 12922980 (-)
nuf2 nuf2 coding upstream 22896 12926056 ~ 12940460 (-)
LOC103034476 zgc:77375,LOC108431553,LOC108254961,LOC107700631,LOC107758152 coding upstream 49350 12952510 ~ 12972311 (-)
LOC103027102 isy1,LOC108431508,LOC108254962,LOC107700632 coding upstream 70780 12973940 ~ 12980817 (-)
LOC111195380 NA coding upstream 80261 12983421 ~ 12990268 (-)
G189381 NA non-coding downstream 6329 12894863 ~ 12896608 (-)
G189380 NA non-coding downstream 11668 12890834 ~ 12891269 (-)
G189376 NA non-coding downstream 22593 12879945 ~ 12880344 (-)
G189352 NA non-coding downstream 134226 12768010 ~ 12768711 (-)
G189349 NA non-coding downstream 191924 12709673 ~ 12711013 (-)
G189402 NA non-coding upstream 127010 13030170 ~ 13032240 (-)
G189404 NA non-coding upstream 147399 13050559 ~ 13053733 (-)
G189417 timp4 non-coding upstream 286618 13189778 ~ 13194807 (-)
G189418 NA non-coding upstream 303880 13207040 ~ 13210220 (-)
G189419 NA non-coding upstream 307628 13210788 ~ 13211185 (-)
LOC111195455 NA other downstream 188905 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 283371 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 507405 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 724327 12160542 ~ 12178610 (-)
G189055 NA other downstream 858644 12043913 ~ 12044293 (-)
tsen2 NA other upstream 159639 13062799 ~ 13076742 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 2415483 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 2506047 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 3442541 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 3666463 16569623 ~ 16599317 (-)

Expression


Co-expression Network