G189418


Basic Information

Item Value
gene id G189418
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 13207040 ~ 13210220 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU256763
TCCCGTTTTTCcttaaaaagaaaggtaaaacaGTCATAATTTGAGTCACCAccagatttaaagtttaaccaaacattttctacatgaggcataaacatcaaaaatgaaataaaatcactccttttaataaaaaagaaacaggcataaaaataaaaataaaaaaaatctggtctCACGTCTCTGTTGCTGGCTCAGGCTGAGGTGTGGATCCACTGGGCTGATTGGCTAATGGGGGTGGGTGGTGTTGATGGTTGAGCAGGTGCTGTCTGAAGCGGTCTCTGATCGCTCAGTTCTTCCAGATCTGAAACCAGTTTCCTGGACCAGTGCTGTAACATTTCAATCACAGCAGGTCCGGTGAAGACGCAGTCCAGCCATCGACCGACAGCTGGACCAAACACAGTCTCTCATCTGAGACtctcctcatgaagtgctctgGTTCAGATGATGTTCACAGTACTGTTGCAGAGGACCCTGTCTCTGAGGGTCAAAACTCCTGTGATGAGCACCACCCCCGCCTTCTCAAACACCCAGAAAACAGCACTGAGCAACATTCAGTCAAAGAGAAAaatccctccaaaaaaaaaaccttaaaagaagaaatcctgAAAGGAATTCTATAATATGGTTAAAAATTGTTTAGCCTcatgaaataactaaaacaaaaattatttccAGCCAAACAATGCTTGATATTTCTAAACtgtataaacattaacattatattgTTGTGCTCTGATGGGGACTCAAAATATAGCTAAGAATATgcaagcaagttcttcattgccagaaatagaaaacatatggaaAGCAAAACAgatagctttgttttatttaaagacatCTGATGTCTCCTTGTTTaagagtcagaaagagagacccAATTCACTGCAGCTCGTAATAGATACAATATTAAGTTTGTCAAATTAAACCTTTCCAAAGAAAGTAAGGTCTTTTCTTACTGGTTTCTAAAATCTACTATCCTCATTAAGAGAATCAAAAGATCAGCATAGACTGAGATACATGAGAACCACTAGAGAAATTAGAtatgtgtattctttaaatctcATTCAGCTGAGACTGAGCTGAAATCAGTCTCAATaagaaaagaataataatagaaaaggcCTAAACCACATGAAGACAGAAGCTGTGTTCAGAAtggctcactcattaactctttcactgtgtagcattttctatttactAAACGAATTATGGAACAACCAAACAataaaccatgtttgtcctgctctgaggacgTCTAATACAACAGCACTGCATTGCATTATAGTATATTTTGAAATTTCTAAATTTTTGTGATGCATTAGGTTTTTCATAGTGAACTATATAGGGAACAGAATGTACTGCTGGGATTTTAAACAGTACTGCAAAAATGGTTTTacactatatagtgcactatttctgGAATAGGGAGCGATTctgacacagccacacacacattatattcaTCATTAGATTAGCTTATAGAATATCAGAGTTAGACAAATGTTagaaacatacacacttacacacacacagacacacacacgcacacgcacaccaAATGTGATAGAAGATAGCAGAAAAGAGATgttttgtctatctctctcactgctttatTCAACAcacgcagaaacacacacacacacattgtatcaAAAGCCTGGAATCCTCATCTCTTTTCTGTTTCAATCAGGGATGACTTTCACAATGTGGACATTTGTACATAACTCATCACTACTACTCAAACATGAAGCTGTCTCACATATTCACTAAACTGTcatcctcagaattctacagcATTCTCCATAAAGATAATGAAACATGTTACATTGAACAGTTCCAGCATGGCTCAATATTCTGCCctactttaatatatgtatattgggTTTATATGCTAATGATTCCAAACCTTTGAACAacactacataaacacacacacacacacacatatagtcTTGGCTCATTTGATTGAAAAGAGCTGCATCATGAATTTTTTGGATTAAGTTTCAATTCTTTAGTTACTTGGGATCCCATTTTGTTCTCTCATTCGATTTTAATGACTCAGAGTAATTTAGCCCCAATAATCACGTCTCACCTTCCTTCTTCTATCCCTGCTTAATACACAATCAGTACCCTgtactattagtattatttatgcACTCCTCCCCACGGTCCCGGGACCTATACTCTAATGACACGTCTATCAATAGAGGCCTCACGACCAGGCTAGTCTTCTCTTTACTTTAaagatatatttacatacatcaATAAAGGCCTCACGACCAGGCTAGTCTTGTACACCGTCATGTAACTATACACTGTCCAGGGCGGAGTGCTGAAGGAAGGATGGAGGggagtaaattaatttaagaacaattgtttacatttaaaatttcctTAATGAGTAAATTAGTTAACCTGTCACTCACCACCAATGTTTGTTGATGAGGCCTGGATTTGCGAATGAGGGGTGAGAGGCCGCACCTGCCCCCGCGGTACTTCGTCCTTATTCTGTGGAATTTTCCCTTGCTTCTGGGGCCCAGCTGTTTTGCTGGAGAGCGTCCTCGGCAGGTGCTTAGTCTCTCCCCCTCCGCCGCAAGACCATGCTCATCCTGTTCCGTGACGCCAAATtgtggtggaaaataatgacaggaagaaagaaatattcagagtctctgagtcttgatcagaatgagtaacaagatttattgagAAGCCACACGTAATGAATACAGAGTGAACTCCTGCCTTGCAAGAGTGCCATGCTCTCTTTATACCTTTTAGATCCTCCCATCCCTTACTTCCCAATTATGGGCACAGTGCCACCATTGTGACACGTCAACTTCTTCTGACAGGTGGTATGACATAATCCCTTAGTGAGCATATCAGACTGGTTCTCAAAACACCGCAAGCAGAAGGAAAAATGACCCTGGCGCCAGAATTGTAGACAGAACAATCCGTGACGTGCACACATACATAGACACACACTGCTTTCCCCAGATAGAAAAACTCTCACTCAGCATCTTAGATATGCTCCTGAGTACACATTATCATCGCATGGaacaaaaagtaatatcattaatagtcgtcattgtttatgaatcatcacacgtcattgattatgaatcatttcaataaacaccttccatcacagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU256763 True 3158 lncRNA 0.39 2 13207040 13210220

Neighbor

gene id symbol gene type direction distance location
pparg pparg coding downstream 74944 13085029 ~ 13132096 (-)
mkrn2 mkrn2 coding downstream 159494 13033576 ~ 13047546 (-)
LOC103027392 cnbp,cnbpb,LOC106583855,LOC107742030,LOC108431552,LOC106566283,LOC108254964,LOC107742027,LOC107675970 coding downstream 208430 12994479 ~ 12998610 (-)
LOC111195380 NA coding downstream 216772 12983421 ~ 12990268 (-)
LOC103027102 isy1,LOC108431508,LOC108254962,LOC107700632 coding downstream 226223 12973940 ~ 12980817 (-)
LOC103033524 mmp19,LOC103033524,LOC108431507,LOC107737372,LOC107683650 coding upstream 174705 13384925 ~ 13395895 (-)
LOC111195441 LOC106570611,LOC106595375,LOC106565963 coding upstream 249515 13459735 ~ 13465405 (-)
gdf11 gdf11,LOC108431504,LOC107385665,LOC101480554,LOC103359380 coding upstream 283356 13493576 ~ 13533622 (-)
LOC103026383 NA coding upstream 346802 13557022 ~ 13572611 (-)
LOC111195442 NA coding upstream 1041244 14251464 ~ 14255472 (-)
G189417 timp4 non-coding downstream 12233 13189778 ~ 13194807 (-)
G189404 NA non-coding downstream 153307 13050559 ~ 13053733 (-)
G189402 NA non-coding downstream 174800 13030170 ~ 13032240 (-)
G189385 NA non-coding downstream 303880 12902937 ~ 12903160 (-)
G189381 NA non-coding downstream 310432 12894863 ~ 12896608 (-)
G189419 NA non-coding upstream 568 13210788 ~ 13211185 (-)
G189422 NA non-coding upstream 33361 13243581 ~ 13243984 (-)
G189448 NA non-coding upstream 105489 13315709 ~ 13315945 (-)
G189455 timeless non-coding upstream 123240 13333460 ~ 13334910 (-)
G189490 NA non-coding upstream 238021 13448241 ~ 13448525 (-)
tsen2 NA other downstream 130298 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 493008 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 587474 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 811508 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 1028430 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 2108423 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 2198987 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 3135481 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 3359403 16569623 ~ 16599317 (-)
cass4 NA other upstream 3623630 16833850 ~ 16869461 (-)

Expression


Co-expression Network