G71198


Basic Information

Item Value
gene id G71198
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 4876405 ~ 4878412 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU81178
TTTATTGCAAACATTTGAGGACTTTGGCACCTGCAAGGCACAGAATACACTTTCATGAGAGAACAGAGTCGAATGGGTCTGCAAAGGAACTGGGGAAAACAATTTCATTTTCACATAGGAAATTCCTTTCACAGAAAGGACAAAGTCTAGCTGCAAACATAAAGGGTAAACGGTACACGGAGCCCATGTATGATCGGCTGTTATCTGCAAGCAGAACCGATGCAAGTGTTCAGTCACCATGAAATTCAACAGCAACCATAATTATTATTAGCTGGCTTGGCCATTTCAAATTCACTGCTGCTTTTCAAAGTGGCGGAGAGATGAATGTGAAGACGGGTCAGGGCTTCTATATATACTGTACTAGTCTTCAGCAGAACGCACAAAGTCATGACACGAAGGCCCACATGCACATGAGCTTTAAAGTGCTGTTCATCCAAAGCCTTCCAAACCGCCCATGCTAAGAGATTTTAACTAGAAGTGGATTTCAATGTCTAACTGCACTGATCTATGCACATTCTTCATGTTTAGTGTCTACCTTCCTTTGAATGGAGTGTTCACACACTCTCTTGTTTAGATGGAAGAATTGCATGTTGCAACCTTTATGTAAGGTTTCTAATACTGTCTCCCATTAACAGCTTAATACTGACAGGCAACACACCATTAAAACACACACATACACACACAGCAGTCATTCTTTATAAAACTATATAATAAAGACAAACTTCCAGTTAGACAAATAAACAGTCAACAGACAGATAAAAGAAAATGGGAACCTCTAAAGGAAGGTCTATGGAAGACTTGACCCGATCAGAATCAGTCTCAGCTGTGTGCAAACGTCTCTAAATCAAGAGCCACGGTGGCTTGAAATCCCATCAGTCATTTATCCTGCGGGGCGGCACACCCCGGCACTGGGCCCTCTGATTATGATGCTCACATGATTTGGTTGCCACAATCCCCAAAAGCTCATTAGGTTTAGTGTTATTCTGGGAGACAAGACTGGGGCGTTTTCTTGGAGATGAGGGTGGAAGTAAACAGGAGTGCAGAAACTTTAGTTTTATGTTCTGAGAACCTGCATAGTGAATTCAAGGCACTGAGGGTTTAATTTAGGGCAGCACACACATTCGCACACACACTTTTGGATACTTTGGTAAGGCAGCTATTTCTACATTTTAGTATTTTGGCATTAGGATGGTGCAGATTCTCTTGCTTGTTTTGGATACACACACACACACACATACTAAATGATGTAAATGGATAGTTTGCCCAAAAATCATCATTTACTCACCGTAATGTCATTCTAAAACTGTATGACTTTTTTCTTTTGTGAAACACAAAAGAGACATTTAGCATATTGTTTACACCGCTCTTTTCCATACTGTCAAGCTCATAAAATATGACAAAAGGCACCATAAAAGTACAACCATCAATACATAAAAGCTATCGCATGGCTTTAGAAAAATTGAAATATAGACCTTAGTCAAGGTAGATGCCATATTGAATCTAAGGGGACAGTTCATCTAAAAATTAAAATGCTGTTATCATTTACTCATCCTCATGTCATTTCAAATGTGTGATTTTCTTTCTTCTGTGGAACATAAAAGAAAATATTTTGAAGAATTTTGGCAGCTAAACAGTTTCGGCTTCCAGTACTGACTTCCAATGTATGGACAAAAAAAAACAAAAAAAACAATGGTTAATGAGAACCGAAACGGTTTCAAAATATCTTCTTTTGTGTTCAACAGAAGAAAAATGCATACAGGTTTGTAACAACATGAGGGTGAGTAAATGATGGCAGAATTGTAATTTTTGGATGGACTATACATTTAACACAGATGAAAACGAGGCTATAAGAGACTACACTGTCCTAGATCATGTCAAACTCACAACTTTAAAAATTGTTTTATGGACTTTGTGTACTAAGTGTTTTTGGATGGTGATAAAGGATTAGTTCACTTTTAAATAAAAATTACTCCAAGCTTTACTCACCCTCAAGCCATCCTAGGTGTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU81178 True 2008 lncRNA 0.38 1 4876405 4878412

Neighbor

gene id symbol gene type direction distance location
CI01000012_04722087_04836261 NA coding upstream 38831 4722087 ~ 4837574 (+)
CI01000012_04647182_04692241 KCNH5, KCNH5B coding upstream 183929 4647182 ~ 4692476 (+)
CI01000012_04595199_04620295 PPP2R5EB, 2A5E, PPP2R5E1, PPP2R5E coding upstream 255952 4593867 ~ 4620453 (+)
CI01000012_04578508_04582452 WDR89 coding upstream 293795 4576995 ~ 4582610 (+)
CI01000012_04551570_04571150 SGPP1 coding upstream 305066 4551169 ~ 4571339 (+)
CI01000012_04939174_04962741 TRIM9 coding downstream 59734 4938146 ~ 4962741 (+)
CI01000012_04966772_04976751 PYGL coding downstream 88303 4966715 ~ 4976903 (+)
CI01000012_04981435_05004449 NIN coding downstream 103023 4981435 ~ 5005112 (+)
CI01000012_05006941_05018373 SAV1 coding downstream 128529 5006941 ~ 5018880 (+)
CI01000012_05035890_05063488 MAP4K5 coding downstream 157114 5035526 ~ 5064475 (+)
G71490 NA non-coding upstream 1091 4875025 ~ 4875314 (+)
G71488 NA non-coding upstream 5586 4870588 ~ 4870819 (+)
G71237 NA non-coding upstream 25892 4792538 ~ 4850513 (+)
G71478 NA non-coding upstream 85539 4790656 ~ 4790866 (+)
G71208 NA non-coding upstream 165482 4706556 ~ 4710923 (+)
G71491 NA non-coding downstream 206 4878618 ~ 4878844 (+)
G71503 NA non-coding downstream 27513 4905925 ~ 4906215 (+)
G71506 NA non-coding downstream 37635 4916047 ~ 4916273 (+)
G71511 NA non-coding downstream 43312 4921724 ~ 4922067 (+)
G71512 NA non-coding downstream 46572 4924984 ~ 4926637 (+)
CI01000012_04495631_04501066 NA other upstream 376316 4495631 ~ 4501066 (+)
CI01000012_04424569_04425090 NA other upstream 450758 4424569 ~ 4425756 (+)
G70029 NA other upstream 2245020 2622478 ~ 2631385 (+)
G68725 NA other upstream 4191549 683523 ~ 684856 (+)
CI01000012_05177587_05180517 SRSF5A other downstream 298483 5176895 ~ 5180970 (+)
G71199 NA other downstream 534838 5413250 ~ 5416785 (+)
G71218 NA other downstream 657440 5535852 ~ 5538384 (+)
G71221 NA other downstream 660113 5538525 ~ 5540456 (+)
G71548 NA other downstream 672081 5550493 ~ 5561433 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006814 NA non-coding NC_007124.7 CM002897.2 36995633 ~ 36997760 (-)