G189638


Basic Information

Item Value
gene id G189638
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 14044745 ~ 14108618 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU257084
tgacagacgataaacgtacaaggatcgacaccggggaaatggaacacggaccttaaatagaggtgcacacacacaggaaacaggaaacacctgggacgaaggggcggagctaaaaatgaacacaggtgagtggaaaaacactgggaatgaaacacagacctgagaaaaacacagacatgagaaCCAGACAGACAAAAGACCTGACATAACCCCCCCTTTAACGCGCAACTCCCGGGGCGCGTAAAAACAGATCCCCAGGAGCCGGGCAAGAGGGGGTGGAAAACACAACAGGATACCAAACAAGACTCAGACTGAACACAGACGAGAGGAGACTGGCCAAAGGACGGGACAGGAAActgaaacacagactggacacTAGACAACAAAGGGGACTGGATATTGGGCTGGACAGGGGATGGGAAACGAGActgaacaggggactggacagggggctgagactggacagggggctgagactggacagggggctgagactggacaggggacaaggactggacaaaagactggacagggggctgagactggacaaaagactggacagggggctgagacttgggaacagggacgaggacattaacagggacagaaacaaacacagtgACTGGGACAGGAACGGAGAAACCACCAGGGACAGGAAccggaacaaacacagacacgggaaccaagacagggagagacagggggaccAAAAACATGGGAGGGTGCCCAGGACCAGCAAAAGTCTGCGGGGAAAGCCTGGCACAGTactgggggcaaagtcaggaggccttgCTGGCCTAGGGACACGGGGCCTAGGGCCAAACATTGTTCTTGGAGCAGGTACAGGAACAGGAGc
>TU257085
tgacagacgataaacgtacaaggatcgacaccggggaaatggaacacggaccttaaatagaggtgcacacacacaggaaacaggaaacacctgggacgaaggggcggagctaaaaatgaacacaggtgagtggaaaaacactgggaatgaaacacagacctgagaataacacagacatgagaaccagacagacaaaagacctgacattga
>TU257086
tgacagacgataaacgtacaaggatcgacaccggggaaatggaacacggaccttaaatagaggtgcacacacacaggaaacaggaaacacctgggacgaaggggcggagctaaaaatgaacacaggtgagtggaaaaacactgggaatgaaacacagacctgagaaaaacacagacatgagaaCCAGACAGACAAAAGACCTGACATAACCCCCCCTTTAACGCGCAACTCCCGGGGCGCGTAAAAACAGATCCCCAGGAGCCGGGCAAGAGGGGGTGGAAAACACAACAGGATACCAAACAAGACTCAGACTGAACACAGACGAGAGGAGACTGGCCAAAGGACGGGACAGGAAActgaaacacagactggacacTAGACAACAAAGGGGACTGGATATTGGGCTGGACAGGGGATGGGAAACGAGActgaacaggggaCAAGAactga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257084 True 856 lncRNA 0.55 2 14107649 14108618
TU257085 False 210 lncRNA 0.47 2 14105824 14108618
TU257086 False 450 lncRNA 0.51 2 14044745 14108618

Neighbor

gene id symbol gene type direction distance location
LOC103026383 NA coding downstream 472134 13557022 ~ 13572611 (-)
gdf11 gdf11,LOC108431504,LOC107385665,LOC101480554,LOC103359380 coding downstream 511123 13493576 ~ 13533622 (-)
LOC111195441 LOC106570611,LOC106595375,LOC106565963 coding downstream 579340 13459735 ~ 13465405 (-)
LOC103033524 mmp19,LOC103033524,LOC108431507,LOC107737372,LOC107683650 coding downstream 648850 13384925 ~ 13395895 (-)
LOC103031721 syn2,syn2b,LOC107758022 coding downstream 762272 13148196 ~ 13282473 (-)
LOC111195442 NA coding upstream 142846 14251464 ~ 14255472 (-)
vgll4 vgll4,LOC107697562,LOC107750033 coding upstream 440528 14549146 ~ 14609624 (-)
tamm41 tamm41 coding upstream 502333 14610951 ~ 14621412 (-)
prph prph coding upstream 516204 14624822 ~ 14638350 (-)
LOC111195382 tuba1c,LOC108431527,LOC105935211,LOC102211704 coding upstream 539188 14647806 ~ 14654334 (-)
G189624 NA non-coding downstream 36485 13979916 ~ 14008260 (-)
G189600 NA non-coding downstream 101346 13941186 ~ 13943399 (-)
G189522 NA non-coding downstream 497846 13546530 ~ 13546899 (-)
G189509 sarnp non-coding downstream 559187 13472625 ~ 13485558 (-)
G189494 cdk2,LOC107570445,LOC107683630,LOC107562245 non-coding downstream 588318 13452154 ~ 13456427 (-)
G189649 NA non-coding upstream 4566 14113184 ~ 14113481 (-)
G189652 NA non-coding upstream 5586 14114204 ~ 14171621 (-)
G189768 NA non-coding upstream 161818 14270436 ~ 14270800 (-)
G189770 NA non-coding upstream 162420 14271038 ~ 14271403 (-)
G189773 NA non-coding upstream 198316 14306934 ~ 14307296 (-)
tsen2 NA other downstream 968003 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 1330713 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 1425179 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 1649213 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 1866135 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 1210025 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 1300589 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 2237083 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 2461005 16569623 ~ 16599317 (-)
cass4 NA other upstream 2725232 16833850 ~ 16869461 (-)

Expression


Co-expression Network