G189845 (ankrd52)


Basic Information

Item Value
gene id G189845
gene name ankrd52
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 14825835 ~ 14830306 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU257371
atatatatatatacaagccATACTACTCTCTCCAATTAATCATATGTGACGATATAGCTGTACACAGTGTTACTGCAGTAGAAATATATGTGCACCACATACACAAATTAAAGCACAAAGACGTCACACATTATCCTCAAAACAAAAATACTGCAGAAggctaaattaagtaaaaaaagattaaataaagacaaataaaGAAGAGAGCACTAGAAATGGTTAAGCcaacacaccagcacacacacttaggtacaatcccatttcaccctttGACCACTTAGCCACTTAGCCCTTCCCCTCTGTTGTGTGCGCTCATGTCTAGGGTTAAGGCGTCCCGTTTCTTGTTAGtctggagggggagggggaagaGTTAGGGCTAcaagacacttttttttaagtggagAGGGTTAACCAGTAGCTGCTAGCTTTCTGAACTGTAGCGCTCCAATGCTATAGCTATATCTGTTATGGGTGCTTACAGGGTAGTACTCGTCTTAGggtggaggatttcaccccttcccttTGTAAATCCATTCCAAATGGAAGGgctacactcaaaaacaagggttttagggtacaaaagagaaatgggattgggccttaaacACACAGGGGTGGAACAATCCAGACAGACAAAGGGATTAACATTGACATTAACATTAAATCTGGTTCCGACAACATGAGTCCAAAAAAGTTGTTCAAGCTGTAACAGCTGGGTTCCTCTTTAGATAAATCGGCTCAAAATGCCTCATTTGTGTTTCAATTTTTGTTGTCAGTTTTTGAGCTTATTCCTTTAAAACACTAGCATACAAACTTTGACAGCTTGACCGTTAAGATTAGTCACTGcttaaaggccaatttatacttctgcatcggACCTATGCCGTAGTCTATGTACAGCCTgtatatttatacttctgtgtacGTGACTCTGCATCGATACCCATTTTAAACCATAAAGGCGGGAAGATGTGGGCGGGAACACAAGGCTcagcagaccaatcacagctgctgctgctgtctgcgACGCTTAGTTACATTTCTGGAGAGGTGTAAAAAGGATGAAAAAGATGTTGACTCATAAAATTAgataacttttttgtttttccttcaTACAAAAATATGTTAAGGGTCAGCAATAGAACAGTATTTTTAAAGCATCAACGTTTTATTATTGTGGTATATTGTAAATAACTGCTGTCACACTAAAAACTTCAAAATCTCCATGTTTGCAGTTTAGTTACAAATGCAAATCTGCAATTTAAAATCAAGCCAATACATTtggaaatgcttaaaaataacttttaatattttgttgccttaaattttattaaacatagCTGATATTTTTTTGAGACACCATGAACCATGAACACCACATGGATTTTTCATATAATCGACTATAATGAGGTATAATGACCTATTCATACAAATACATGGGTGCGTGTTGGGCAACGCTTGGGGGACGCGGCTACATGCATGATACACATAAGCTACAGTGTAGGTttaatgcagaagtataaattggcctcaAGTGTAAAAATGGTAAGCCCCTTCCTTAGTGGAatcatttctaatatttttcttttaaatgaaaCATTATACTCAGAAATCCAAAGCAATTGTGAGGTAATGCGTAATAAAACTGTGCTATGTGCAATTATtgctctcaaaaaaaaaaaaagtatttcaaataatacaaaatatcaaataaaaatatatattaaaataagcaTGAAAAAGGCAGTCCAAATATTTCCTGAATGAGGAAAGTAAACTTGTGCCCAGACTGGCTTTCAAACATATTAGCCAATCACAAACCAATGAGTTCATCTCACCTCTTCTCTCCAAATTAACTGCAAGTATATTTATAGTATGTGTGCTTTGTTGCTTTCCTCTTGTAACCTAACCCAAAATAATGTTCTTGTAATAAAGGAGGGGGGAGCAGACGAGTGTCAGAGGTAAAGAAGAAAGAGACAAGGAGGGTTAAAAGACAGGTGTataaccctgttactcgcatgGTCTGATCAGCACAGGCACCGCACAGAATTCTGGAATTATCcagaatgttttgttttttatctgagaaacaaaaagaacaaaaaaagaaaaaagaaagaaagaaaatattgaACAGTCGTTTAAAGAGACACTTAAGCCTGACCAGGAAAACTCCACTTTGAATAAAAGTGGAAGGAGCTTATGAAGCATCTTACAAAACAAACTAATATATTTCATATCTATGTTGTGTCCAAAACAAGCGATAATGAACACTCTAAAAAGTAGCCAATTAGTATTCTTAATCCGTATATATCGCTGTGACGATTAACTAAAGGTTAGTTGAACTGAAGAGTTGCAAATGTGGCAGAACAAAATGTTCAACTTTTCCCACTAGGGGGCCGCACTAACCCGGTCTgatttagcaaaacaaaaacgGGCTGTATCCCAAACCGCACAGTACTGCACTATTTTGGAAGAGCATTTATGAATTGCAGTTATTAATGCAGTAAATACAGAAGTGTGTGCTCCATTATGTTAGACTAACCACATAAATGTCAATGTTTAACTTGAAATTAAATGCAGTGTTCCTAGTCAGGCTGCAGCTTCCCTTTAATATTTAAGATGTATTCAgtaatgtgcaaataaaaaaaaaaaaaaaaaagcaatttggTATTGCTGCGATGGTTCCACGTACAGTCAAACCCATGTAAACCCCCCCAAACACGGCTACAGTCGCTCCTGATCTGCAGAACAACTCGAAATTAAACGGATTTATATGAGCTGGGGTTAATATTTGCATATACAACAAGTTTGACTGCACAATTAAAGGAAATACTTGCgcaaaacaaacatacatacacacacgcacacacacgctaGCATAATGCTAACATAATGCTAGCACATGGTAGTACATTCCTGCCcttatatagtgtgtgtgtgtgttggttataTAGGTGTTTATGCAGATTCTAAGAATCTGCCAGGGTGACAGTTTAAGGAAAAAAGTGCATCAGCACATCATGGTAAGGGGTGGAAGAGGGGCGTGGCCTGCTAGGGGTGGGTACGtgcgtatgtatgtgtgtgtgtgtgtgtgtgtgttaaagagtGTGTACTTCTCAATCGGTGAGGCAGCTGTCCAGCCCTACAGTGGCGTGACGCTCCTTGGAATAGCTGTGCCGTAGGCTGCCGTTGGGCAGGGGGTGGCGAGTGGCGATGATGCCACAGTGCTTTAACAGATTGAGGCTGTAGGTGGCGCCAGCGGTGGGGTCTTTGGAAGGAAAAGGCTTCATGGTAGAGAGGATGAGAGCCAGGCAGTCCGCCACGTCTTTGTTTGGCGCACAGGCTAGAGCAGGGGTGTGAC

Function

symbol description
ankrd52 Orthologous to human ANKRD52 (ankyrin repeat domain 52).

NR:

description
PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257371 True 3364 lncRNA 0.39 3 14825835 14830306

Neighbor

gene id symbol gene type direction distance location
LOC103039903 LOC103039903,LOC108431517,LOC108255002,LOC107697969,LOC107598614,LOC107715030,LOC107671896,LOC102210977 coding downstream 30084 14786322 ~ 14795751 (-)
LOC103039087 NA coding downstream 47494 14767313 ~ 14778341 (-)
LOC103038772 NA coding downstream 61480 14754376 ~ 14764355 (-)
dnajc14 dnajc14,LOC107562234 coding downstream 97521 14720385 ~ 14728314 (-)
mcrs1 mcrs1,LOC107696040 coding downstream 131720 14679927 ~ 14694115 (-)
LOC103040538 si:ch73-190f16.2,nabp2,LOC108424604,LOC107557546,LOC108255000,LOC107572067 coding upstream 16816 14847122 ~ 14856386 (-)
LOC111195383 LOC108424608 coding upstream 123831 14954137 ~ 14955419 (-)
LOC103047892 LOC108424570 coding upstream 143272 14973578 ~ 14984895 (-)
fndc11 NA coding upstream 201967 15032273 ~ 15033061 (-)
LOC103021615 NA coding upstream 211369 15041675 ~ 15054177 (-)
G189841 NA non-coding downstream 10804 14812998 ~ 14815031 (-)
G189837 ankrd52,LOC105017093,LOC106565408,LOC106583345 non-coding downstream 19963 14797593 ~ 14805872 (-)
G189823 NA non-coding downstream 26207 14717436 ~ 14799628 (-)
G189835 cnpy2,LOC103039390,LOC108431501,LOC107572063 non-coding downstream 42935 14780548 ~ 14782900 (-)
G189834 NA non-coding downstream 65461 14759788 ~ 14760374 (-)
G189846 NA non-coding upstream 12270 14842576 ~ 14844243 (-)
G189852 NA non-coding upstream 36115 14866421 ~ 14867739 (-)
G189867 LOC108424607 non-coding upstream 75870 14906176 ~ 14914065 (-)
G189951 NA non-coding upstream 209675 15039981 ~ 15041242 (-)
G189958 NA non-coding upstream 229650 15059956 ~ 15197059 (-)
tsen2 NA other downstream 1749093 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 2111803 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 2206269 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 2430303 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 2647225 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 488337 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 578901 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 1515395 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 1739317 16569623 ~ 16599317 (-)
cass4 NA other upstream 2003544 16833850 ~ 16869461 (-)

Expression


Co-expression Network