G189951


Basic Information

Item Value
gene id G189951
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15039981 ~ 15041242 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU257499
gctgcgcctgtgttgtaattttgatggatgtgttttgtgcttttgcagcgcttttcaatttgcactgcgctgggctttctcggccaccgtagataCTTCAGTAAAAAACACTCTCAAATCATGAGCACATTTGCTGGAATTTTACACATTGCATCTGGTGATTCATAGACAATAGCTAATGCTTTATTCAAGTTCCTGGATGACAACAAATTACCTGTACAGAACTGCATTGGTCTTGTAACTGATGGATGCAATACAATGTGTGGACAGCATAACTCAGTGCTGCAGAAATTTCGGCAACGTAATCCCCATATTGTCTACATCAAGTGTGTATGCCATTCCCTTCAGCTCTGTGCATCAAAGGCTGTGAATGTTTTGCCCGGAAATGTGGAGTATATGGTGTCACAGACCTACAACTGGTTTTCAAATGCCACCCAGAGGCTTCAGAAATATGCAGAATTGTACAAGACCATAAATGTAGGTGAAAATCCTCTGAAAATACTGCAATTAGCAGACACTAGGTGGCTTGCTATCAGTGAGTGTGTCAATCGTATCCTTACACAGTAACAAGGGGCTGAAGCTGCATTTCCAACTGACAAAAGACAGTGAAAGAAGCTACGCTGCTGAGTTGCTTTACCAAATGTACAGTGACAAAATCAATCTGATCTACCTGAAATTCCTTCAACCAATTGTGTCAGAGTTAAACaggattaataaaatatttcagctTGACACAGCCAATCCTGGAAAACGTCTAGAAGACGCTTCTTGAGCGAATTGGGCTGCCACAGACATTCAAGAGCTGGCATGACATCATGGAATTCAACCTGTCTGACCATCTTTTGCCCACTGATGCTGTAGACTTTGGAGTACAGTTCCGTCTTGCTTTGCACGAATCAAGTGGAATAAGTGACCAGGCTATACAAGACCTGAAAAGCAGATGCGGGGACTACATGCTGGAATTGGCTAAAGAGATAAAAAATTTCCGTCTCCAAGCAATGTCAATGTTCTGCACGTGAATAAGCCAAAGCTGGATGATCTTCACTTCTTCTCTCACTTGAAAGGAGACATAGGAAAAGCAGAGCAACAGTGGAGAATCATACATACTCTTGATTGGAAAAAAGAGGCGTTTTTAGCGGGCAAAATGCTAACGTGGGGGCTCggtgtgtggataaggactggggataagagttagctagctagctagtctggaGAGGCGTTTTTAGCGGGCAAAATGCTAACGTGGGGGCTCGGTGGGTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257499 True 1262 lncRNA 0.43 1 15039981 15041242

Neighbor

gene id symbol gene type direction distance location
fndc11 NA coding downstream 6920 15032273 ~ 15033061 (-)
LOC103047892 LOC108424570 coding downstream 55086 14973578 ~ 14984895 (-)
LOC111195383 LOC108424608 coding downstream 84562 14954137 ~ 14955419 (-)
LOC103040538 si:ch73-190f16.2,nabp2,LOC108424604,LOC107557546,LOC108255000,LOC107572067 coding downstream 183595 14847122 ~ 14856386 (-)
LOC103039903 LOC103039903,LOC108431517,LOC108255002,LOC107697969,LOC107598614,LOC107715030,LOC107671896,LOC102210977 coding downstream 244230 14786322 ~ 14795751 (-)
LOC103021615 NA coding upstream 433 15041675 ~ 15054177 (-)
tp53rk tp53rk coding upstream 14927 15056169 ~ 15061088 (-)
LOC103042686 LOC103042686,LOC108424612,LOC108255211,LOC105895941,LOC104930306 coding upstream 32379 15073621 ~ 15087689 (-)
LOC103044311 ube2v1,LOC107572061,LOC105022328,LOC106572481,LOC107683645,LOC103044311,LOC108425074 coding upstream 48983 15090225 ~ 15096142 (-)
LOC103042998 ptk6,LOC108255075,LOC103372356 coding upstream 59233 15100475 ~ 15130469 (-)
G189867 LOC108424607 non-coding downstream 125916 14906176 ~ 14914065 (-)
G189852 NA non-coding downstream 172242 14866421 ~ 14867739 (-)
G189846 NA non-coding downstream 195738 14842576 ~ 14844243 (-)
G189845 ankrd52 non-coding downstream 209675 14825835 ~ 14830306 (-)
G189841 NA non-coding downstream 224950 14812998 ~ 14815031 (-)
G189958 NA non-coding upstream 18714 15059956 ~ 15197059 (-)
G189956 NA non-coding upstream 60486 15101728 ~ 15135426 (-)
G189987 NA non-coding upstream 157184 15198426 ~ 15202766 (-)
G190001 NA non-coding upstream 168375 15209617 ~ 15284715 (-)
G190004 NA non-coding upstream 174396 15215638 ~ 15217350 (-)
tsen2 NA other downstream 1963239 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 2325949 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 2420415 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 2644449 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 2861371 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 277401 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 367965 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 1304459 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 1528381 16569623 ~ 16599317 (-)
cass4 NA other upstream 1792608 16833850 ~ 16869461 (-)

Expression


Co-expression Network