G189958


Basic Information

Item Value
gene id G189958
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15059956 ~ 15197059 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU257514
agcagcagagactaGCATTAGTTAATAGCTATGGTTATTacctgggtaataaatcaggttaaagtGGACCTGAAGAGCCATTTagcccatatatatatatatatatatatattagtactAGTTTAAGGAGCTCAGTCTACAGTCCTCTCAGAATTTCAATGAGCTACAATAGAAAATCTATATCAAATTTAATCCTGATCTGGTTTTGCTGGTGATAACTGTGACTTTGAAGGGTGAAGTGGATTGAAATCAATACCTCTATGACCTGGCTGAAtcctaatgctgctttaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgctaAAGAAAGCCATATACACTCATACCTGCTGTTCATTTCTGTAATATaaagttgtttttaatattctggATTTTGAACATCAGTAATCAGTCGGTTCAATATCTGTGAACGAAATTTTGTGAGCAATCAAAATGGTTTAATTAcagatgttttttgtttctttgtttgttttggttgtttGGTGAGCAGAAAGAAGGGGCGGGGTCTTTTTATATGCAAAaaaattctacaaaaaaaatgtaaaaggggAATCAAAGAATGGTGAAAGGGTTTGTAATGTATCCATTAAAAAGATCTAGTTTTAGGACTGTGCATGTTAATAACGACACTGTACTAACAACTAACGTACAGCTACTCtgtaaatactgttattattattattattattattattattattattattattat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257514 True 770 lncRNA 0.33 3 15059956 15197059

Neighbor

gene id symbol gene type direction distance location
LOC103021615 NA coding downstream 5779 15041675 ~ 15054177 (-)
fndc11 NA coding downstream 26895 15032273 ~ 15033061 (-)
LOC103047892 LOC108424570 coding downstream 75061 14973578 ~ 14984895 (-)
LOC111195383 LOC108424608 coding downstream 104537 14954137 ~ 14955419 (-)
LOC103040538 si:ch73-190f16.2,nabp2,LOC108424604,LOC107557546,LOC108255000,LOC107572067 coding downstream 203570 14847122 ~ 14856386 (-)
LOC111195446 kaznb,LOC108424680,LOC107749453,LOC107685722,LOC105028825 coding upstream 39923 15236982 ~ 15282579 (-)
LOC103025355 NA coding upstream 99600 15296659 ~ 15305207 (-)
LOC103026384 LOC108424671,LOC107566077,LOC107691346,LOC107727851 coding upstream 162116 15359175 ~ 15407969 (-)
LOC103034615 LOC108424674,LOC108254857,LOC107685660,LOC107749446,LOC107727818,LOC107691350,LOC105912234 coding upstream 271154 15468213 ~ 15503648 (-)
rbm12 rbm12,LOC108424674,LOC107685660,LOC107749443,LOC107551121,LOC107581359 coding upstream 298651 15495710 ~ 15504391 (-)
G189951 NA non-coding downstream 18714 15039981 ~ 15041242 (-)
G189867 LOC108424607 non-coding downstream 145891 14906176 ~ 14914065 (-)
G189852 NA non-coding downstream 192217 14866421 ~ 14867739 (-)
G189846 NA non-coding downstream 215713 14842576 ~ 14844243 (-)
G189845 ankrd52 non-coding downstream 229650 14825835 ~ 14830306 (-)
G189987 NA non-coding upstream 1367 15198426 ~ 15202766 (-)
G190001 NA non-coding upstream 12558 15209617 ~ 15284715 (-)
G190004 NA non-coding upstream 18579 15215638 ~ 15217350 (-)
G190171 NA non-coding upstream 156378 15353437 ~ 15354632 (-)
G190183 NA non-coding upstream 191036 15388095 ~ 15451570 (-)
tsen2 NA other downstream 1983214 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 2345924 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 2440390 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 2664424 12298049 ~ 12395532 (-)
eogt eogt,LOC107729408 other downstream 2881346 12160542 ~ 12178610 (-)
LOC103024926 dynlrb1,LOC106565026 other upstream 121584 15318643 ~ 15322175 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other upstream 212148 15409207 ~ 15466584 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 1148642 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 1372564 16569623 ~ 16599317 (-)
cass4 NA other upstream 1636791 16833850 ~ 16869461 (-)

Expression


Co-expression Network