G190183


Basic Information

Item Value
gene id G190183
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15388095 ~ 15451570 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU257807
atagatagatagatagatagatagatagatagatagatagatacagtagatagatagatagatagatagatagatagatagatagatagatagatagatactttattgatccccgaggggaaattctagacatccagcagcagacacaaagttacaaaataaaatatattaaatataaagatacagatacatataaatacaatcaaatagaaaatagaatgtacaatgtaaagtgtaaaagtacagtctttagtgtgtgtaatgtagaatgg

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
ko00310 Lysine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU257807 True 272 lncRNA 0.28 2 15388095 15451570

Neighbor

gene id symbol gene type direction distance location
LOC103025355 NA coding downstream 82888 15296659 ~ 15305207 (-)
LOC111195446 kaznb,LOC108424680,LOC107749453,LOC107685722,LOC105028825 coding downstream 105516 15236982 ~ 15282579 (-)
LOC107197607 ptk6,LOC108231632 coding downstream 225334 15134775 ~ 15162761 (-)
LOC103042998 ptk6,LOC108255075,LOC103372356 coding downstream 257626 15100475 ~ 15130469 (-)
LOC103044311 ube2v1,LOC107572061,LOC105022328,LOC106572481,LOC107683645,LOC103044311,LOC108425074 coding downstream 291953 15090225 ~ 15096142 (-)
LOC103034615 LOC108424674,LOC108254857,LOC107685660,LOC107749446,LOC107727818,LOC107691350,LOC105912234 coding upstream 16643 15468213 ~ 15503648 (-)
rbm12 rbm12,LOC108424674,LOC107685660,LOC107749443,LOC107551121,LOC107581359 coding upstream 44140 15495710 ~ 15504391 (-)
ppcs ppcs,LOC107685733,LOC107565714,LOC107551114,LOC107749447,LOC107691385 coding upstream 68095 15519665 ~ 15524173 (-)
efcc1 efcc1,LOC107581369 coding upstream 271729 15723299 ~ 15761602 (-)
acad9 acad9,LOC107749438,LOC107566791,LOC107551129 coding upstream 314313 15765883 ~ 15784654 (-)
G190171 NA non-coding downstream 33463 15353437 ~ 15354632 (-)
G190001 NA non-coding downstream 103380 15209617 ~ 15284715 (-)
G190004 NA non-coding downstream 170745 15215638 ~ 15217350 (-)
G189987 NA non-coding downstream 185329 15198426 ~ 15202766 (-)
G189958 NA non-coding downstream 191036 15059956 ~ 15197059 (-)
G190199 NA non-coding upstream 104951 15556521 ~ 15569271 (-)
G190204 NA non-coding upstream 145757 15597327 ~ 15607905 (-)
G190214 NA non-coding upstream 266529 15718099 ~ 15798757 (-)
G190232 NA non-coding upstream 339155 15790725 ~ 15866179 (-)
G190252 NA non-coding upstream 457465 15909035 ~ 15909528 (-)
LOC103024926 dynlrb1,LOC106565026 other downstream 65920 15318643 ~ 15322175 (-)
tsen2 NA other downstream 2311353 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 2674063 12612611 ~ 12714032 (-)
G189335 psma5,LOC107685984 other downstream 2768529 12614912 ~ 12619566 (-)
mapkapk3 mapkapk3,LOC102784126,LOC107384936,LOC101473327,LOC102305022,LOC102199310,LOC106525176 other downstream 2992563 12298049 ~ 12395532 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 894131 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 1118053 16569623 ~ 16599317 (-)
cass4 NA other upstream 1382280 16833850 ~ 16869461 (-)
irf6 irf6,LOC107599105,LOC106565674 other upstream 1729544 17181114 ~ 17193747 (-)
G190788 NA other upstream 1765751 17217321 ~ 17219780 (-)

Expression


Co-expression Network