G190204


Basic Information

Item Value
gene id G190204
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 15597327 ~ 15607905 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU257846
caaaccagaatatgttttatatcgtttagatgatcagttttgaacatctctgctggattttctcagtcagttttatgaggtagagtctcctggaattcaggctttcagttaacagctgtgctgaactcatcaagagttaattacttgaatttcttgtctcttaatgtaaagtttgagagcatcagttaaagtaaagtagtgaagaggcagagttacaggtatacagtgaatagtgaatatttgagtaatgttctaatccagg
>TU257848
caaaccagaatatgttttatatcgtttagatgatcagttttgaacatctctgctggattttctcagtcagttttatgaggtagagtctcctggaattcaggctttcagttaacagctgtgctgaactcatcaagagttaattattgaatttcttgtctcttaataatgtgtttgagagcatcagttaaagtaaagtagtgaagaggtagagttacaggtatacagtgaatagtg

Function

GO:

id name namespace
GO:0044448 obsolete cell cortex part cellular_component
GO:0032156 septin cytoskeleton cellular_component
GO:0031105 septin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU257846 True 262 lncRNA 0.35 2 15605716 15607905
TU257848 False 234 lncRNA 0.35 2 15597327 15605977

Neighbor

gene id symbol gene type direction distance location
ppcs ppcs,LOC107685733,LOC107565714,LOC107551114,LOC107749447,LOC107691385 coding downstream 73154 15519665 ~ 15524173 (-)
rbm12 rbm12,LOC108424674,LOC107685660,LOC107749443,LOC107551121,LOC107581359 coding downstream 92936 15495710 ~ 15504391 (-)
LOC103034615 LOC108424674,LOC108254857,LOC107685660,LOC107749446,LOC107727818,LOC107691350,LOC105912234 coding downstream 93679 15468213 ~ 15503648 (-)
LOC103026384 LOC108424671,LOC107566077,LOC107691346,LOC107727851 coding downstream 189358 15359175 ~ 15407969 (-)
LOC103025355 NA coding downstream 292120 15296659 ~ 15305207 (-)
efcc1 efcc1,LOC107581369 coding upstream 115394 15723299 ~ 15761602 (-)
acad9 acad9,LOC107749438,LOC107566791,LOC107551129 coding upstream 157978 15765883 ~ 15784654 (-)
LOC103030908 LOC103362890,LOC104939527,LOC101063010 coding upstream 206315 15814220 ~ 15825239 (-)
LOC103047460 NA coding upstream 224183 15832088 ~ 15833721 (-)
LOC103030277 LOC108415871 coding upstream 238956 15846861 ~ 15851191 (-)
G190199 NA non-coding downstream 28056 15556521 ~ 15569271 (-)
G190183 NA non-coding downstream 145757 15388095 ~ 15451570 (-)
G190171 NA non-coding downstream 242695 15353437 ~ 15354632 (-)
G190001 NA non-coding downstream 312612 15209617 ~ 15284715 (-)
G190004 NA non-coding downstream 379977 15215638 ~ 15217350 (-)
G190214 NA non-coding upstream 110194 15718099 ~ 15798757 (-)
G190232 NA non-coding upstream 182820 15790725 ~ 15866179 (-)
G190252 NA non-coding upstream 301130 15909035 ~ 15909528 (-)
G190257 NA non-coding upstream 358590 15966495 ~ 15969045 (-)
G190265 NA non-coding upstream 387291 15995196 ~ 16002227 (-)
LOC103026676 LOC108424672,LOC108254855,LOC107691347,LOC107749448,LOC107685659,LOC107551122,LOC106582641 other downstream 130743 15409207 ~ 15466584 (-)
LOC103024926 dynlrb1,LOC106565026 other downstream 275152 15318643 ~ 15322175 (-)
tsen2 NA other downstream 2520585 13062799 ~ 13076742 (-)
LOC111195455 NA other downstream 2883295 12612611 ~ 12714032 (-)
G190405 fbln2,LOC108424659,LOC107727849,LOC107691338 other upstream 737796 16345701 ~ 16460928 (-)
ptpdc1 NA other upstream 961718 16569623 ~ 16599317 (-)
cass4 NA other upstream 1225945 16833850 ~ 16869461 (-)
irf6 irf6,LOC107599105,LOC106565674 other upstream 1573209 17181114 ~ 17193747 (-)
G190788 NA other upstream 1609416 17217321 ~ 17219780 (-)

Expression


Co-expression Network